Variant report

Variant	rs72909366
Chromosome Location	chr2:73685307-73685308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCT7-2	chr2:73685068-73686609	ENSG00000230002.1
2	lnc-CCT7-2	chr2:73685068-73686611	ENSG00000230002.2
3	lnc-CCT7-2	chr2:73685068-73686604	NR_046762

rs_ID	r²[population]
rs57306374	0.86[AFR][1000 genomes]
rs57934429	0.86[AFR][1000 genomes]
rs57944776	0.86[AFR][1000 genomes]
rs58030479	0.86[AFR][1000 genomes]
rs58093963	0.86[AFR][1000 genomes]
rs58934547	0.86[AFR][1000 genomes]
rs60200911	0.86[AFR][1000 genomes]
rs72907389	0.86[AFR][1000 genomes]
rs72907392	0.86[AFR][1000 genomes]
rs72907402	0.86[AFR][1000 genomes]
rs72909304	0.86[AFR][1000 genomes]
rs72909313	0.86[AFR][1000 genomes]
rs72909353	0.86[AFR][1000 genomes]
rs72909378	0.86[AFR][1000 genomes]
rs72909382	0.86[AFR][1000 genomes]
rs72909392	0.86[AFR][1000 genomes]
rs72911304	0.86[AFR][1000 genomes]
rs72911333	0.86[AFR][1000 genomes]
rs72911350	0.86[AFR][1000 genomes]
rs72913432	0.86[AFR][1000 genomes]
rs72913438	0.86[AFR][1000 genomes]
rs72913457	0.86[AFR][1000 genomes]
rs72913460	0.86[AFR][1000 genomes]
rs72913478	0.86[AFR][1000 genomes]
rs72913480	0.86[AFR][1000 genomes]
rs72913485	0.86[AFR][1000 genomes]
rs72913489	0.86[AFR][1000 genomes]

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73645600-73685600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:73652200-73688400	Weak transcription	Colonic Mucosa	Colon
3	chr2:73663800-73689400	Weak transcription	NHDF-Ad	bronchial
4	chr2:73673000-73687200	Weak transcription	NHEK	skin
5	chr2:73674600-73685600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:73675800-73688800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr2:73676200-73719400	Weak transcription	Colon Smooth Muscle	Colon
8	chr2:73676600-73685600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr2:73676600-73687200	Weak transcription	Esophagus	oesophagus
10	chr2:73676800-73687600	Weak transcription	Brain Substantia Nigra	brain
11	chr2:73676800-73688000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr2:73676800-73706400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr2:73677000-73685800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:73677000-73688000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:73677000-73688400	Weak transcription	Psoas Muscle	Psoas
16	chr2:73677000-73698000	Weak transcription	Hela-S3	cervix
17	chr2:73677000-73714200	Weak transcription	Pancreas	Pancrea
18	chr2:73677200-73687200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:73677200-73689000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr2:73677200-73689200	Weak transcription	Osteobl	bone
21	chr2:73677400-73686800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr2:73677400-73687600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr2:73677800-73686800	Weak transcription	Small Intestine	intestine
24	chr2:73677800-73688200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr2:73678000-73688400	Weak transcription	Spleen	Spleen
26	chr2:73678000-73706800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr2:73678200-73685600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr2:73678200-73687200	Weak transcription	Right Ventricle	heart
29	chr2:73678400-73685400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr2:73678400-73686800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:73678600-73685600	Weak transcription	Fetal Heart	heart
32	chr2:73678600-73686600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr2:73678600-73686800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr2:73678600-73686800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr2:73678600-73687600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr2:73678600-73688400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr2:73678800-73685600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr2:73678800-73687000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr2:73678800-73687400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr2:73678800-73688400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr2:73679200-73685600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr2:73679200-73697000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr2:73679600-73686600	Weak transcription	Thymus	Thymus
44	chr2:73679600-73687400	Weak transcription	Lung	lung
45	chr2:73679600-73688000	Weak transcription	HSMMtube	muscle
46	chr2:73679800-73692600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr2:73680000-73685600	Weak transcription	Fetal Brain Male	brain
48	chr2:73680000-73689600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr2:73680200-73706400	Weak transcription	Brain Hippocampus Middle	brain
50	chr2:73680200-73714200	Weak transcription	Brain Inferior Temporal Lobe	brain

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