Variant report

Variant	rs72910509
Chromosome Location	chr1:58099385-58099386
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs72908578	0.82[AFR][1000 genomes]
rs72908593	0.89[AFR][1000 genomes]
rs72908597	1.00[AMR][1000 genomes]
rs7550025	0.86[AFR][1000 genomes]
rs7552341	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012555	chr1:57950355-58103389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58097400-58099600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr1:58097600-58100200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:58098000-58099800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:58098200-58099400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr1:58098600-58099400	Enhancers	Fetal Brain Female	brain
6	chr1:58098800-58099400	Enhancers	Fetal Brain Male	brain
7	chr1:58098800-58099600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:58098800-58099800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:58098800-58100800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:58099000-58099800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:58099000-58099800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:58099200-58102200	Weak transcription	NHEK	skin
13	chr1:58099200-58103000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:58099200-58104200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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