Variant report

Variant	rs72910650
Chromosome Location	chr6:82767875-82767876
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12529800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544208	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910640	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82766400-82768200	Enhancers	Brain Germinal Matrix	brain
2	chr6:82766400-82768400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:82766400-82768400	Enhancers	Brain Substantia Nigra	brain
4	chr6:82766400-82768400	Enhancers	Fetal Muscle Leg	muscle
5	chr6:82766600-82768200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:82766600-82768400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:82766600-82768400	Enhancers	Brain Cingulate Gyrus	brain
8	chr6:82766600-82768400	Enhancers	Fetal Lung	lung
9	chr6:82766800-82768000	Enhancers	Stomach Smooth Muscle	stomach
10	chr6:82766800-82768200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:82767000-82768800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:82767200-82768000	Enhancers	HMEC	breast
13	chr6:82767200-82768000	Enhancers	Osteobl	bone
14	chr6:82767200-82768200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:82767200-82768200	Enhancers	Fetal Heart	heart
16	chr6:82767200-82768400	Enhancers	Fetal Brain Female	brain
17	chr6:82767200-82768400	Enhancers	NHLF	lung
18	chr6:82767400-82768000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:82767400-82768000	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr6:82767400-82768000	Enhancers	HSMM	muscle
21	chr6:82767600-82768000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:82767600-82768000	Flanking Active TSS	NHDF-Ad	bronchial
23	chr6:82767600-82768200	Enhancers	Ovary	ovary
24	chr6:82767600-82768400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:82767800-82768000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:82767800-82768000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:82767800-82768000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:82767800-82768000	Flanking Active TSS	Brain Angular Gyrus	brain
29	chr6:82767800-82768000	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr6:82767800-82768000	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr6:82767800-82768000	Enhancers	Pancreas	Pancrea
32	chr6:82767800-82768200	Enhancers	Fetal Brain Male	brain
33	chr6:82767800-82768200	Enhancers	Fetal Muscle Trunk	muscle
34	chr6:82767800-82768400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:82767800-82768400	Enhancers	Esophagus	oesophagus
36	chr6:82767800-82768400	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links