Variant report

Variant	rs72910861
Chromosome Location	chr2:55198003-55198004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55195869..55197384-chr2:55197903..55200472,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RTN4-1	chr2:55196736-55198803	ENSG00000248316
2	lnc-EML6-2	chr2:55197791-55198009	NONHSAT070751

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56153341	0.81[AFR][1000 genomes]
rs72912565	0.81[AFR][1000 genomes]
rs72914511	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv582029	chr2:55159043-55204498	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55173200-55203400	Weak transcription	Gastric	stomach
2	chr2:55181600-55203400	Weak transcription	Ovary	ovary
3	chr2:55183200-55206800	Weak transcription	Stomach Mucosa	stomach
4	chr2:55184800-55214800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:55190000-55198400	Weak transcription	Colonic Mucosa	Colon
6	chr2:55190000-55203400	Weak transcription	Small Intestine	intestine
7	chr2:55191200-55198200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:55191200-55199200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:55191800-55203600	Weak transcription	Fetal Lung	lung
10	chr2:55191800-55211600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr2:55191800-55234200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr2:55192200-55198600	Strong transcription	Fetal Stomach	stomach
13	chr2:55192600-55198600	Strong transcription	Fetal Intestine Small	intestine
14	chr2:55193400-55199000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr2:55193400-55201800	Strong transcription	Muscle Satellite Cultured Cells	--
16	chr2:55193400-55214800	Strong transcription	HepG2	liver
17	chr2:55193600-55200800	Strong transcription	A549	lung
18	chr2:55193600-55201800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:55193600-55214600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr2:55193800-55198200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr2:55193800-55198600	Genic enhancers	Lung	lung
22	chr2:55193800-55202400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:55193800-55211800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr2:55194000-55198600	Strong transcription	Brain Germinal Matrix	brain
25	chr2:55194000-55199000	Strong transcription	Stomach Smooth Muscle	stomach
26	chr2:55194000-55211800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr2:55194200-55198600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr2:55194200-55204400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr2:55194400-55198200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr2:55194400-55200200	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr2:55194400-55200200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr2:55194400-55201400	Strong transcription	Primary B cells from cord blood	blood
33	chr2:55194600-55202200	Strong transcription	NHDF-Ad	bronchial
34	chr2:55194600-55204400	Strong transcription	Primary T cells from cord blood	blood
35	chr2:55194800-55201200	Strong transcription	Primary B cells from peripheral blood	blood
36	chr2:55194800-55202400	Strong transcription	NHLF	lung
37	chr2:55195000-55199600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:55195000-55203200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr2:55195000-55215200	Strong transcription	Dnd41	blood
40	chr2:55195200-55199200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr2:55195200-55201200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr2:55195200-55201600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr2:55195200-55202000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr2:55195200-55202600	Strong transcription	Osteobl	bone
45	chr2:55195200-55205600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr2:55195200-55205800	Strong transcription	HMEC	breast
47	chr2:55195400-55198600	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr2:55195400-55199400	Strong transcription	Fetal Intestine Large	intestine
49	chr2:55195400-55202200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr2:55195400-55205200	Strong transcription	Monocytes-CD14+_RO01746	blood

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