Variant report

Variant	rs72911632
Chromosome Location	chr4:121928932-121928933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs58464928	0.81[AFR][1000 genomes]
rs72909704	0.81[AFR][1000 genomes]
rs72909705	0.81[AFR][1000 genomes]
rs72909707	0.81[AFR][1000 genomes]
rs72909714	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909716	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909719	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909722	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909725	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909742	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909744	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909746	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72911635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121916200-121930800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:121925000-121929200	Enhancers	Fetal Intestine Large	intestine
3	chr4:121925600-121933800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:121926600-121929000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:121927200-121930400	Enhancers	Fetal Intestine Small	intestine
6	chr4:121927600-121929200	Weak transcription	Primary T cells from cord blood	blood
7	chr4:121927800-121929000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr4:121928600-121936400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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