Variant report

Variant	rs72911968
Chromosome Location	chr1:61784621-61784622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61784481..61786407-chr1:61788060..61789976,3	K562	blood:
2	chr1:61783085..61786028-chr1:61788145..61790007,2	MCF-7	breast:
3	chr1:61733972..61736610-chr1:61780635..61784681,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57722822	0.87[AFR][1000 genomes]
rs72911952	1.00[AMR][1000 genomes]
rs72911960	0.86[AFR][1000 genomes]
rs72911971	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72911974	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv994970	chr1:61693951-62199657	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1006142	chr1:61696142-62119763	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv534980	chr1:61696142-62119763	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv916868	chr1:61700430-62119762	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1001052	chr1:61702011-62090670	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv817402	chr1:61703965-62119762	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv1010797	chr1:61703966-62125970	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv530494	chr1:61723918-62084045	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
9	nsv1000294	chr1:61746280-62350718	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61744600-61798600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:61778400-61792800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:61779200-61785200	Weak transcription	Fetal Intestine Small	intestine
4	chr1:61782200-61788600	Weak transcription	Fetal Brain Female	brain
5	chr1:61782400-61785400	Weak transcription	Spleen	Spleen
6	chr1:61783600-61784800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr1:61783600-61785000	Enhancers	HUVEC	blood vessel
8	chr1:61783800-61784800	Enhancers	Fetal Kidney	kidney
9	chr1:61783800-61784800	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr1:61783800-61785000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:61783800-61785000	Enhancers	Primary hematopoietic stem cells	blood
12	chr1:61783800-61785000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:61783800-61785000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr1:61783800-61785000	Enhancers	HMEC	breast
15	chr1:61783800-61785600	Enhancers	Rectal Smooth Muscle	rectum
16	chr1:61783800-61786000	Enhancers	Brain Cingulate Gyrus	brain
17	chr1:61784000-61784800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:61784000-61784800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:61784000-61784800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr1:61784000-61784800	Enhancers	Esophagus	oesophagus
21	chr1:61784000-61784800	Flanking Active TSS	Fetal Heart	heart
22	chr1:61784000-61784800	Flanking Active TSS	Fetal Lung	lung
23	chr1:61784000-61784800	Enhancers	Gastric	stomach
24	chr1:61784000-61784800	Enhancers	Left Ventricle	heart
25	chr1:61784000-61784800	Enhancers	Pancreas	Pancrea
26	chr1:61784000-61784800	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr1:61784000-61784800	Enhancers	HSMM	muscle
28	chr1:61784000-61784800	Flanking Active TSS	Osteobl	bone
29	chr1:61784000-61785000	Flanking Active TSS	Colon Smooth Muscle	Colon
30	chr1:61784000-61785000	Flanking Active TSS	GM12878-XiMat	blood
31	chr1:61784000-61785800	Enhancers	HSMMtube	muscle
32	chr1:61784000-61786200	Enhancers	Brain Substantia Nigra	brain
33	chr1:61784000-61786200	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr1:61784000-61786200	Enhancers	Stomach Mucosa	stomach
35	chr1:61784000-61786400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:61784000-61786400	Enhancers	Fetal Muscle Leg	muscle
37	chr1:61784000-61786600	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr1:61784000-61786600	Enhancers	Brain Anterior Caudate	brain
39	chr1:61784000-61786600	Enhancers	Brain Hippocampus Middle	brain
40	chr1:61784000-61786600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr1:61784000-61786600	Enhancers	Fetal Stomach	stomach
42	chr1:61784000-61787200	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr1:61784000-61790000	Enhancers	Liver	Liver
44	chr1:61784200-61784800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr1:61784200-61784800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr1:61784200-61784800	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr1:61784200-61784800	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr1:61784200-61784800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
49	chr1:61784200-61784800	Enhancers	Psoas Muscle	Psoas
50	chr1:61784200-61785200	Enhancers	Hela-S3	cervix

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