Variant report

Variant	rs72912628
Chromosome Location	chr2:189850103-189850104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:189849262..189851265-chr2:189851542..189854419,2	MCF-7	breast:
2	chr2:189843846..189845833-chr2:189848371..189850816,2	K562	blood:
3	chr2:189468604..189471181-chr2:189847592..189850287,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10168216	0.81[EUR][1000 genomes]
rs10194304	0.81[EUR][1000 genomes]
rs10194475	0.81[EUR][1000 genomes]
rs10497695	0.94[EUR][1000 genomes]
rs11902058	0.94[EUR][1000 genomes]
rs12105286	0.94[EUR][1000 genomes]
rs12105340	0.94[EUR][1000 genomes]
rs13306257	0.94[EUR][1000 genomes]
rs13306267	0.94[EUR][1000 genomes]
rs13306268	0.94[EUR][1000 genomes]
rs13306269	0.94[EUR][1000 genomes]
rs2271679	0.94[EUR][1000 genomes]
rs28736387	0.94[EUR][1000 genomes]
rs28763879	0.85[EUR][1000 genomes]
rs3736488	0.94[EUR][1000 genomes]
rs3765160	0.81[EUR][1000 genomes]
rs3765161	0.81[EUR][1000 genomes]
rs41265581	1.00[EUR][1000 genomes]
rs41272817	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41272839	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55972740	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56355765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72912634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72912645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7576108	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459992	chr2:189796272-189855943	Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv584057	chr2:189796272-189855943	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875609	chr2:189796272-189862097	Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv875610	chr2:189796272-189904674	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv584058	chr2:189799499-189855943	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	esv1791841	chr2:189811074-189864582	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv584059	chr2:189841052-189868381	Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
9	nsv875612	chr2:189841052-189878769	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
10	nsv584060	chr2:189844000-189876138	Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv584061	chr2:189844000-189878769	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189839400-189858000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:189841400-189864000	Weak transcription	Left Ventricle	heart
3	chr2:189841800-189875200	Weak transcription	Colonic Mucosa	Colon
4	chr2:189842400-189866600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr2:189843400-189861800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr2:189843600-189874200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:189844400-189866200	Weak transcription	Psoas Muscle	Psoas
8	chr2:189844600-189859000	Weak transcription	Fetal Intestine Small	intestine
9	chr2:189844800-189850800	Enhancers	Rectal Smooth Muscle	rectum
10	chr2:189844800-189851400	Weak transcription	Fetal Kidney	kidney
11	chr2:189844800-189857200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:189847600-189879200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:189847800-189858600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:189848200-189858000	Weak transcription	Aorta	Aorta
15	chr2:189848400-189851800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr2:189848400-189851800	Genic enhancers	Osteobl	bone
17	chr2:189848800-189851800	Genic enhancers	HSMM	muscle
18	chr2:189849000-189850200	Strong transcription	Duodenum Smooth Muscle	Duodenum
19	chr2:189849200-189850200	Genic enhancers	NHLF	lung
20	chr2:189849200-189851000	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:189849200-189852000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr2:189849400-189852000	Genic enhancers	Adipose Nuclei	Adipose
23	chr2:189849400-189852200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr2:189849400-189877600	Strong transcription	Placenta	Placenta
25	chr2:189849600-189850400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:189849600-189850600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr2:189849600-189851800	Genic enhancers	Colon Smooth Muscle	Colon
28	chr2:189849600-189876200	Strong transcription	Stomach Smooth Muscle	stomach
29	chr2:189849800-189850400	Weak transcription	Ovary	ovary
30	chr2:189849800-189850600	Genic enhancers	Fetal Muscle Leg	muscle
31	chr2:189849800-189851600	Strong transcription	Fetal Lung	lung
32	chr2:189849800-189852200	Genic enhancers	Muscle Satellite Cultured Cells	--
33	chr2:189849800-189853600	Strong transcription	Fetal Muscle Trunk	muscle
34	chr2:189849800-189856200	Weak transcription	Fetal Stomach	stomach
35	chr2:189849800-189856400	Weak transcription	Fetal Intestine Large	intestine
36	chr2:189849800-189871000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr2:189850000-189851400	Weak transcription	HSMMtube	muscle
38	chr2:189850000-189851800	Genic enhancers	NHDF-Ad	bronchial
39	chr2:189850000-189854200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr2:189850000-189854400	Weak transcription	NH-A	brain
41	chr2:189850000-189865000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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