Variant report

Variant	rs72914841
Chromosome Location	chr4:119969389-119969390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119961771..119963428-chr4:119969203..119971294,2	MCF-7	breast:
2	chr4:119964653..119967509-chr4:119968374..119970104,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs72908519	1.00[AMR][1000 genomes]
rs72908528	1.00[AMR][1000 genomes]
rs72908531	1.00[AMR][1000 genomes]
rs72914826	0.83[AMR][1000 genomes]
rs72914838	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119956200-119973200	Weak transcription	Psoas Muscle	Psoas
2	chr4:119958800-119970400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr4:119962200-119973200	Weak transcription	Left Ventricle	heart
4	chr4:119962200-119973200	Weak transcription	Right Atrium	heart
5	chr4:119963200-119969600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:119963200-119970200	Weak transcription	Fetal Kidney	kidney
7	chr4:119963200-119973400	Weak transcription	Aorta	Aorta
8	chr4:119964000-119980400	Weak transcription	Fetal Stomach	stomach
9	chr4:119964200-119969800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:119965400-119969800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:119965800-119971000	Enhancers	Colon Smooth Muscle	Colon
12	chr4:119966200-119973000	Weak transcription	Right Ventricle	heart
13	chr4:119966400-119971400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:119967400-119994000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:119967800-119969600	Weak transcription	NHLF	lung
16	chr4:119967800-119973800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:119967800-119975200	Weak transcription	Pancreas	Pancrea
18	chr4:119967800-119977400	Weak transcription	Gastric	stomach
19	chr4:119968000-119969600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:119968000-119970200	Weak transcription	Fetal Lung	lung
21	chr4:119968000-119970600	Weak transcription	HSMMtube	muscle
22	chr4:119968000-119970600	Weak transcription	Osteobl	bone
23	chr4:119968000-119971400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr4:119968600-119969800	Weak transcription	Ovary	ovary
25	chr4:119968600-119971400	Weak transcription	HSMM	muscle
26	chr4:119968800-119973200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:119968800-119974000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr4:119969200-119969400	Enhancers	Stomach Smooth Muscle	stomach
29	chr4:119969200-119969800	Flanking Active TSS	A549	lung
30	chr4:119969200-119973200	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links