Variant report

Variant	rs72917722
Chromosome Location	chr3:88021261-88021262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs72913747	0.89[AFR][1000 genomes]
rs72913758	0.89[AFR][1000 genomes]
rs72913780	0.89[AFR][1000 genomes]
rs72915611	0.89[AFR][1000 genomes]
rs72915637	0.89[AFR][1000 genomes]
rs72915646	0.89[AFR][1000 genomes]
rs72915662	0.89[AFR][1000 genomes]
rs72915665	0.89[AFR][1000 genomes]
rs72915670	0.89[AFR][1000 genomes]
rs72915677	0.89[AFR][1000 genomes]
rs72915684	0.89[AFR][1000 genomes]
rs72915697	0.89[AFR][1000 genomes]
rs72917717	0.89[AFR][1000 genomes]
rs72917736	1.00[AFR][1000 genomes]
rs72917744	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88012400-88023800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:88014200-88027000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:88020200-88023000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:88020600-88037000	Weak transcription	K562	blood
5	chr3:88020800-88026800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:88021000-88022000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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