Variant report

Variant	rs72917940
Chromosome Location	chr3:67753554-67753555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72919772	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv876922	chr3:67635506-67755257	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67705600-67756200	Weak transcription	Aorta	Aorta
2	chr3:67705800-67776000	Weak transcription	Ovary	ovary
3	chr3:67721200-67759200	Weak transcription	Psoas Muscle	Psoas
4	chr3:67721400-67800400	Weak transcription	Left Ventricle	heart
5	chr3:67727800-67755000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:67748600-67754000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:67748800-67753800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:67748800-67753800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:67748800-67754000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:67749000-67754000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:67750800-67756600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:67751400-67753800	Weak transcription	Colon Smooth Muscle	Colon
13	chr3:67751600-67754600	Weak transcription	Liver	Liver
14	chr3:67751800-67757200	Weak transcription	Fetal Intestine Large	intestine
15	chr3:67752800-67755400	Weak transcription	HSMMtube	muscle
16	chr3:67753200-67754800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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