Variant report

Variant	rs72918743
Chromosome Location	chr11:33657034-33657035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33654474..33658649-chr11:33659750..33663424,5	MCF-7	breast:
2	chr11:33651094..33655040-chr11:33655885..33660180,5	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12574877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12577446	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12577755	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16924503	0.80[EUR][1000 genomes]
rs35067732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55643801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55809805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7116148	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120970	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7121042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72918753	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7947213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7947399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7947544	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7949605	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9737368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869418	chr11:33053073-33662479	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv832112	chr11:33469782-33683052	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33640600-33666400	Weak transcription	Brain Germinal Matrix	brain
2	chr11:33640800-33673600	Weak transcription	Fetal Brain Male	brain
3	chr11:33642600-33673600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:33642800-33657400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:33643000-33673600	Weak transcription	Brain Angular Gyrus	brain
6	chr11:33644600-33657600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:33652200-33659600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:33652400-33659200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:33653200-33658400	Weak transcription	Esophagus	oesophagus
10	chr11:33654000-33658600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:33654200-33666400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:33654200-33666600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:33654400-33657800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:33654400-33657800	Enhancers	Placenta	Placenta
15	chr11:33654400-33657800	Enhancers	Osteobl	bone
16	chr11:33654800-33657800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:33655000-33657600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:33655000-33657800	Enhancers	NHDF-Ad	bronchial
19	chr11:33655200-33659000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:33655800-33657200	Enhancers	NHLF	lung
21	chr11:33655800-33657800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:33655800-33657800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:33656000-33657400	Enhancers	HSMMtube	muscle
24	chr11:33656000-33657400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr11:33656000-33658800	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr11:33656000-33659400	Enhancers	HMEC	breast
27	chr11:33656000-33667200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:33656200-33657600	Enhancers	Hela-S3	cervix
29	chr11:33656200-33659200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr11:33656200-33659400	Enhancers	NHEK	skin
31	chr11:33656200-33667200	Weak transcription	Fetal Brain Female	brain
32	chr11:33656400-33657800	Enhancers	Placenta Amnion	Placenta Amnion
33	chr11:33656400-33658600	Enhancers	Adipose Nuclei	Adipose
34	chr11:33656600-33657400	Enhancers	Fetal Lung	lung
35	chr11:33656600-33658200	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr11:33656800-33657200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:33656800-33657600	Weak transcription	Right Atrium	heart
38	chr11:33656800-33667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:33656800-33673600	Weak transcription	NH-A	brain
40	chr11:33657000-33658000	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links