Variant report

Variant	rs72919279
Chromosome Location	chr4:119187154-119187155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10001247	0.91[EUR][1000 genomes]
rs10001520	0.91[EUR][1000 genomes]
rs10004607	0.91[EUR][1000 genomes]
rs10007918	0.95[EUR][1000 genomes]
rs10012051	0.86[EUR][1000 genomes]
rs10014402	0.95[EUR][1000 genomes]
rs10019969	0.91[EUR][1000 genomes]
rs10020944	0.91[EUR][1000 genomes]
rs10021970	0.82[EUR][1000 genomes]
rs10023656	0.91[EUR][1000 genomes]
rs10024765	0.81[EUR][1000 genomes]
rs10028343	0.95[EUR][1000 genomes]
rs10028980	0.91[EUR][1000 genomes]
rs10518291	0.95[EUR][1000 genomes]
rs11930405	0.91[EUR][1000 genomes]
rs11931778	0.91[EUR][1000 genomes]
rs11931869	0.83[EUR][1000 genomes]
rs11934128	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11934324	0.95[EUR][1000 genomes]
rs11935016	0.95[EUR][1000 genomes]
rs11942654	0.81[EUR][1000 genomes]
rs11944236	0.95[EUR][1000 genomes]
rs11945958	0.95[EUR][1000 genomes]
rs11946833	0.95[EUR][1000 genomes]
rs11946941	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11947911	0.91[EUR][1000 genomes]
rs13105764	0.98[ASN][1000 genomes]
rs13434652	0.91[EUR][1000 genomes]
rs13434825	0.95[EUR][1000 genomes]
rs1589719	0.95[EUR][1000 genomes]
rs17049622	0.91[EUR][1000 genomes]
rs17049625	0.91[EUR][1000 genomes]
rs17049650	0.95[EUR][1000 genomes]
rs17049676	0.95[EUR][1000 genomes]
rs17049690	0.95[EUR][1000 genomes]
rs17049693	0.95[EUR][1000 genomes]
rs17049694	0.95[EUR][1000 genomes]
rs17049695	0.95[EUR][1000 genomes]
rs17049697	0.95[EUR][1000 genomes]
rs17049698	0.95[EUR][1000 genomes]
rs17049699	0.95[EUR][1000 genomes]
rs17049700	0.95[EUR][1000 genomes]
rs17049706	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs17049717	1.00[ASN][1000 genomes]
rs17049718	0.91[EUR][1000 genomes]
rs17642108	1.00[ASN][1000 genomes]
rs17642125	1.00[ASN][1000 genomes]
rs17693234	0.86[ASN][1000 genomes]
rs1829910	0.95[EUR][1000 genomes]
rs1829911	0.95[EUR][1000 genomes]
rs2292598	0.86[ASN][1000 genomes]
rs28374287	0.95[EUR][1000 genomes]
rs28507199	0.91[EUR][1000 genomes]
rs28515963	0.95[EUR][1000 genomes]
rs28536042	0.91[EUR][1000 genomes]
rs28562324	0.91[EUR][1000 genomes]
rs28589481	0.95[EUR][1000 genomes]
rs28648504	0.95[EUR][1000 genomes]
rs28665669	0.86[EUR][1000 genomes]
rs28667401	0.91[EUR][1000 genomes]
rs28668316	0.91[EUR][1000 genomes]
rs28683619	0.82[EUR][1000 genomes]
rs28690846	0.95[EUR][1000 genomes]
rs28734874	0.95[EUR][1000 genomes]
rs28826087	0.81[EUR][1000 genomes]
rs28848859	0.91[EUR][1000 genomes]
rs28851582	0.82[EUR][1000 genomes]
rs28856120	0.91[EUR][1000 genomes]
rs28882407	0.91[EUR][1000 genomes]
rs34001669	0.98[ASN][1000 genomes]
rs34062804	0.98[ASN][1000 genomes]
rs34618724	0.98[ASN][1000 genomes]
rs35000235	0.98[ASN][1000 genomes]
rs3805191	0.86[ASN][1000 genomes]
rs41278063	0.95[EUR][1000 genomes]
rs41278065	0.95[EUR][1000 genomes]
rs4147036	0.95[EUR][1000 genomes]
rs4147037	0.91[EUR][1000 genomes]
rs4147038	0.95[EUR][1000 genomes]
rs4147039	0.95[EUR][1000 genomes]
rs4147040	0.95[EUR][1000 genomes]
rs41520948	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4557347	0.91[EUR][1000 genomes]
rs60958074	0.95[EUR][1000 genomes]
rs61390934	0.91[EUR][1000 genomes]
rs6824418	0.95[EUR][1000 genomes]
rs6842491	0.91[EUR][1000 genomes]
rs6845921	0.83[EUR][1000 genomes]
rs6848301	0.91[EUR][1000 genomes]
rs6856765	0.95[EUR][1000 genomes]
rs71608357	0.98[ASN][1000 genomes]
rs72919205	0.95[EUR][1000 genomes]
rs72919235	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72919237	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72919245	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72919247	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72919251	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72919254	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72919259	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72919264	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72919267	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72919272	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72919275	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72919276	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7654652	0.91[EUR][1000 genomes]
rs9968544	0.91[EUR][1000 genomes]
rs9992747	0.91[EUR][1000 genomes]
rs9998199	0.91[EUR][1000 genomes]
rs9998981	0.91[EUR][1000 genomes]
rs9999336	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1009076	chr4:118949490-119269424	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1001236	chr4:118949490-119271243	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv34038	chr4:119035124-119455391	Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1001138	chr4:119095147-119461837	Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv537230	chr4:119095147-119461837	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv1002771	chr4:119125361-119571237	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv1003731	chr4:119138262-119506032	Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	esv1794655	chr4:119170156-119212103	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119186000-119187800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr4:119186000-119191200	Weak transcription	Dnd41	blood
3	chr4:119186200-119187200	Active TSS	Fetal Intestine Large	intestine
4	chr4:119186200-119187400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:119186400-119187200	Active TSS	H1 Cell Line	embryonic stem cell
6	chr4:119186400-119187200	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr4:119186400-119187200	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr4:119186400-119187200	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr4:119186400-119187200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:119186400-119187200	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr4:119186400-119187200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:119186400-119187200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:119186400-119187200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:119186400-119187200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:119186400-119187200	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr4:119186400-119187200	Active TSS	Primary T cells from cord blood	blood
17	chr4:119186400-119187200	Active TSS	Primary hematopoietic stem cells short term culture	blood
18	chr4:119186400-119187200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr4:119186400-119187200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:119186400-119187200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr4:119186400-119187200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr4:119186400-119187200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr4:119186400-119187200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:119186400-119187200	Active TSS	Muscle Satellite Cultured Cells	--
25	chr4:119186400-119187200	Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr4:119186400-119187200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:119186400-119187200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:119186400-119187200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr4:119186400-119187200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
30	chr4:119186400-119187200	Active TSS	Brain Angular Gyrus	brain
31	chr4:119186400-119187200	Active TSS	Brain Anterior Caudate	brain
32	chr4:119186400-119187200	Active TSS	Brain Germinal Matrix	brain
33	chr4:119186400-119187200	Active TSS	Colonic Mucosa	Colon
34	chr4:119186400-119187200	Active TSS	Colon Smooth Muscle	Colon
35	chr4:119186400-119187200	Active TSS	Duodenum Mucosa	Duodenum
36	chr4:119186400-119187200	Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr4:119186400-119187200	Active TSS	Esophagus	oesophagus
38	chr4:119186400-119187200	Active TSS	Fetal Brain Female	brain
39	chr4:119186400-119187200	Active TSS	Fetal Intestine Small	intestine
40	chr4:119186400-119187200	Active TSS	Fetal Kidney	kidney
41	chr4:119186400-119187200	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr4:119186400-119187200	Active TSS	Placenta	Placenta
43	chr4:119186400-119187200	Active TSS	Fetal Stomach	stomach
44	chr4:119186400-119187200	Active TSS	Fetal Thymus	thymus
45	chr4:119186400-119187200	Active TSS	Gastric	stomach
46	chr4:119186400-119187200	Active TSS	Pancreas	Pancrea
47	chr4:119186400-119187200	Active TSS	Placenta Amnion	Placenta Amnion
48	chr4:119186400-119187200	Active TSS	Rectal Smooth Muscle	rectum
49	chr4:119186400-119187200	Active TSS	Sigmoid Colon	Sigmoid Colon
50	chr4:119186400-119187200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach

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