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Variant report
Variant
rs72919413
Chromosome Location
chr1:70995058-70995059
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:2)
CpG islands (count:0)
Chromatin interactive region (count:2)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
CTCF
chr1:70995040-70995190
Caco-2
colon:
n/a
n/a
2
SMC3
chr1:70994042-70995325
SK-N-SH
brain:
n/a
chr1:70994604-70994618
No data
(count:2 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr1:70994251..70996830-chr1:71512472..71514167,2
MCF-7
breast:
2
chr1:70994687..70995382-chr1:71515481..71516643,4
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000233020
TF binding region
ENSG00000050628
Chromatin interaction
Extended variants information (count: 4 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:3)
rs_ID
r
2
[population]
rs11799955
1.00[AMR][1000 genomes]
rs11807696
1.00[AMR][1000 genomes]
rs11809364
1.00[AMR][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv999219
chr1:70730556-71014911
Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS
TF binding regionCpG islandChromatin interactive regionlncRNA
49 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links