Variant report

Variant	rs7292072
Chromosome Location	chr22:30307125-30307126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:30305656..30307780-chr22:30310595..30312503,3	MCF-7	breast:
2	chr22:30277897..30280164-chr22:30306298..30309228,2	K562	blood:

Variant related genes	Relation type
ENSG00000100330	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs58158427	1.00[AFR][1000 genomes]
rs6006287	1.00[AFR][1000 genomes]
rs7284772	1.00[AFR][1000 genomes]
rs7286610	1.00[AFR][1000 genomes]
rs7287472	1.00[AFR][1000 genomes]
rs7287547	1.00[AFR][1000 genomes]
rs7289121	1.00[AFR][1000 genomes]
rs7290334	1.00[AFR][1000 genomes]
rs7290601	1.00[AFR][1000 genomes]
rs7290936	1.00[AFR][1000 genomes]
rs7291270	1.00[AFR][1000 genomes]
rs7291597	1.00[AFR][1000 genomes]
rs7291748	1.00[AFR][1000 genomes]
rs7291902	1.00[AFR][1000 genomes]
rs7293189	1.00[AFR][1000 genomes]
rs73162767	1.00[AFR][1000 genomes]
rs9754503	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30281400-30312200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr22:30282200-30310200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr22:30287000-30319600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr22:30290400-30312000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr22:30298000-30314600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr22:30299800-30308400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr22:30299800-30308400	Weak transcription	Lung	lung
8	chr22:30301400-30308000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr22:30302200-30308400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr22:30302200-30308400	Weak transcription	Gastric	stomach
11	chr22:30303400-30308400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr22:30304000-30308400	Weak transcription	Small Intestine	intestine
13	chr22:30304000-30309000	Weak transcription	Placenta	Placenta
14	chr22:30304000-30309800	Weak transcription	Brain Germinal Matrix	brain
15	chr22:30304200-30308400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr22:30304200-30312800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr22:30304400-30307200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr22:30304400-30308000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr22:30304400-30308000	Weak transcription	NHDF-Ad	bronchial
20	chr22:30304400-30308200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr22:30304400-30308200	Weak transcription	NHLF	lung
22	chr22:30304400-30308400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr22:30304400-30308400	Weak transcription	Aorta	Aorta
24	chr22:30304400-30308400	Weak transcription	Liver	Liver
25	chr22:30304400-30308400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr22:30304400-30308400	Weak transcription	Fetal Stomach	stomach
27	chr22:30304400-30308600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr22:30304400-30309200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr22:30304400-30310800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr22:30304400-30312000	Weak transcription	Fetal Kidney	kidney
31	chr22:30304400-30312400	Weak transcription	Brain Hippocampus Middle	brain
32	chr22:30304400-30321000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr22:30304600-30307200	Weak transcription	HepG2	liver
34	chr22:30304600-30307800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr22:30304600-30307800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr22:30304600-30307800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr22:30304600-30308000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr22:30304600-30308000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr22:30304600-30308000	Weak transcription	HSMMtube	muscle
40	chr22:30304600-30308200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr22:30304600-30308200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr22:30304600-30308200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr22:30304600-30308200	Weak transcription	Osteobl	bone
44	chr22:30304600-30308400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr22:30304600-30308400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr22:30304600-30308400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr22:30304600-30308400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr22:30304600-30308400	Weak transcription	Adipose Nuclei	Adipose
49	chr22:30304600-30308400	Weak transcription	GM12878-XiMat	blood
50	chr22:30304600-30308400	Weak transcription	NH-A	brain

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