Variant report

Variant	rs72921110
Chromosome Location	chr4:125351302-125351303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125332025..125334312-chr4:125349004..125351907,3	MCF-7	breast:
2	chr4:125341571..125343319-chr4:125349939..125352424,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57987646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59131282	1.00[AMR][1000 genomes]
rs72919151	1.00[AMR][1000 genomes]
rs72919155	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv432624	chr4:125013395-125367740	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998024	chr4:125019384-125380876	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537241	chr4:125019384-125380876	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1015049	chr4:125037090-125393067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2760890	chr4:125273456-125466931	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879881	chr4:125280852-125448288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125348400-125353400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:125348800-125353000	Weak transcription	Gastric	stomach
3	chr4:125349400-125353000	Weak transcription	Esophagus	oesophagus
4	chr4:125349400-125353000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:125349400-125353000	Weak transcription	Lung	lung
6	chr4:125349400-125353200	Weak transcription	Colonic Mucosa	Colon
7	chr4:125349600-125352000	Enhancers	NHDF-Ad	bronchial
8	chr4:125350000-125351400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:125350200-125351400	Enhancers	Fetal Lung	lung
10	chr4:125350200-125351400	Enhancers	NH-A	brain
11	chr4:125350400-125351400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:125350400-125351400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:125350400-125351400	Enhancers	Fetal Heart	heart
14	chr4:125350400-125351400	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr4:125350600-125352800	Weak transcription	NHLF	lung
16	chr4:125350600-125353000	Weak transcription	HSMM	muscle
17	chr4:125350600-125358800	Weak transcription	Fetal Intestine Small	intestine
18	chr4:125350800-125351400	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr4:125350800-125351400	Enhancers	NHEK	skin
20	chr4:125350800-125352000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr4:125350800-125352200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:125350800-125353000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:125350800-125353000	Weak transcription	HMEC	breast
24	chr4:125350800-125357000	Weak transcription	Pancreas	Pancrea
25	chr4:125350800-125357200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:125350800-125359000	Weak transcription	Right Atrium	heart
27	chr4:125351000-125351400	Enhancers	Primary B cells from cord blood	blood
28	chr4:125351000-125351400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:125351000-125352800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:125351000-125354200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr4:125351200-125351400	Enhancers	H1 Cell Line	embryonic stem cell
32	chr4:125351200-125351400	Enhancers	Small Intestine	intestine
33	chr4:125351200-125352200	Enhancers	A549	lung
34	chr4:125351200-125352800	Weak transcription	Stomach Mucosa	stomach
35	chr4:125351200-125352800	Enhancers	HUVEC	blood vessel
36	chr4:125351200-125352800	Weak transcription	Osteobl	bone
37	chr4:125351200-125353000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:125351200-125353000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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