Variant report

Variant	rs72921550
Chromosome Location	chr2:76495559-76495560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs72921556	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72921568	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73940106	0.92[AFR][1000 genomes]
rs7567520	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7580347	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874312	chr2:76430941-76500077	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76492400-76505200	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:76495000-76495800	Enhancers	Hela-S3	cervix
3	chr2:76495400-76495800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:76495400-76495800	Enhancers	Fetal Lung	lung
5	chr2:76495400-76495800	Enhancers	NHLF	lung
6	chr2:76495400-76496200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:76495400-76496200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr2:76495400-76496200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:76495400-76496600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:76495400-76497200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:76495400-76503600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links