Variant report

Variant	rs72921836
Chromosome Location	chr3:90059921-90059922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs11128081	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11917293	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11918512	0.90[AMR][1000 genomes]
rs11920640	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11924267	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12106840	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12107978	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12107987	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1402829	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1402830	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1402831	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1521801	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1521805	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1915788	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1996783	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1996784	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2204078	0.91[AFR][1000 genomes]
rs2204079	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs55719953	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs55726199	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs56257056	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs57237979	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58442773	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58444511	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs58944054	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58977999	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6551449	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6770945	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6772724	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6780268	0.83[AFR][1000 genomes]
rs6782153	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6787044	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6789752	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6793888	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6798554	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6800191	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6804358	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs72921847	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72921850	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72921853	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72921855	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs72921864	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72921866	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72921873	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72921876	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923735	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923736	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923737	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923739	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923741	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923755	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923757	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923762	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923764	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923765	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923767	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923768	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923770	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923771	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923776	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923777	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923779	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923781	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923783	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923784	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72923786	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73846008	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73849912	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7610765	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7619437	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7626330	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7627792	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7637541	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7648089	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7648275	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7648900	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs939741	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008018	chr3:89382031-90254063	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536639	chr3:89382031-90254063	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1010932	chr3:89424428-90192503	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1010021	chr3:89521983-90141988	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv530024	chr3:89548440-90304841	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv869889	chr3:89653238-90087372	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1008130	chr3:89837442-90192503	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1010796	chr3:89870548-90192503	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1013598	chr3:89879377-90192503	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv536642	chr3:89879377-90192503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv590966	chr3:89904882-90199759	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1007523	chr3:89951855-90144385	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1011581	chr3:89951855-90144746	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv997583	chr3:89951855-90154534	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1006665	chr3:89958844-90162193	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv998541	chr3:89961515-90153365	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv536643	chr3:89961515-90153365	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv590967	chr3:89979895-90138312	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv590968	chr3:89979895-90199759	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv460761	chr3:89987871-90138312	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv590969	chr3:89987871-90138312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv590970	chr3:89987871-90441306	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
23	nsv1010292	chr3:90057464-90192503	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:90057400-90064400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:90057600-90060200	Weak transcription	NHDF-Ad	bronchial
3	chr3:90058000-90060200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:90058000-90064600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:90058600-90061000	Enhancers	Colon Smooth Muscle	Colon
6	chr3:90058600-90061600	Enhancers	Fetal Heart	heart
7	chr3:90058800-90060400	Enhancers	Rectal Smooth Muscle	rectum
8	chr3:90058800-90060600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr3:90058800-90060600	Enhancers	NH-A	brain
10	chr3:90058800-90060800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:90058800-90060800	Enhancers	Osteobl	bone
12	chr3:90058800-90061000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:90059000-90060200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:90059000-90060800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:90059000-90061400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:90059000-90061600	Enhancers	HSMMtube	muscle
17	chr3:90059200-90060200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr3:90059200-90060200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:90059200-90060200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:90059200-90060400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:90059200-90060600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:90059200-90061000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:90059400-90060200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr3:90059400-90060200	Weak transcription	HSMM	muscle
25	chr3:90059400-90060400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr3:90059400-90061600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:90059600-90060000	Enhancers	Stomach Smooth Muscle	stomach
28	chr3:90059600-90060200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:90059600-90060200	Weak transcription	Aorta	Aorta
30	chr3:90059600-90060200	Enhancers	Brain Hippocampus Middle	brain
31	chr3:90059600-90060200	Weak transcription	HMEC	breast
32	chr3:90059600-90060400	Enhancers	H1 Cell Line	embryonic stem cell
33	chr3:90059600-90060600	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr3:90059600-90060600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:90059600-90060600	Enhancers	Ovary	ovary
36	chr3:90059600-90061000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:90059800-90060000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr3:90059800-90060200	Enhancers	Fetal Lung	lung
39	chr3:90059800-90060400	Weak transcription	NHLF	lung
40	chr3:90059800-90060600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:90059800-90060600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr3:90059800-90060800	Enhancers	Brain Germinal Matrix	brain
43	chr3:90059800-90064400	Weak transcription	Hela-S3	cervix

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