Variant report

Variant	rs72922904
Chromosome Location	chr3:49377213-49377214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:49207496..49209154-chr3:49376769..49379124,2	MCF-7	breast:
2	chr3:49375789..49379333-chr3:49446166..49450939,13	K562	blood:
3	chr3:49377155..49378069-chr3:49448666..49449475,2	K562	blood:
4	chr3:49377138..49377684-chr5:177631401..177631997,2	Hela-S3	cervix:
5	chr3:49376524..49378988-chr3:49507303..49509521,2	MCF-7	breast:
6	chr10:103985827..103986440-chr3:49377038..49377591,2	NB4	blood:
7	chr3:49376764..49379634-chr3:49465144..49467494,3	MCF-7	breast:
8	chr3:49375139..49377482-chr3:49460180..49462859,2	MCF-7	breast:
9	chr2:85766095..85766892-chr3:49376843..49377475,2	Hela-S3	cervix:
10	chr17:40896657..40897248-chr3:49377139..49377737,2	Hela-S3	cervix:
11	chr3:49375307..49378756-chr3:49465334..49469314,4	K562	blood:
12	chr3:49375112..49379681-chr3:49446166..49452291,17	K562	blood:
13	chr3:49376293..49379620-chr3:49448851..49451356,3	MCF-7	breast:
14	chr3:49377084..49379212-chr3:49447955..49450362,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000145029	Chromatin interaction
ENSG00000067560	Chromatin interaction
ENSG00000119915	Chromatin interaction
ENSG00000145022	Chromatin interaction
ENSG00000173402	Chromatin interaction
ENSG00000235261	Chromatin interaction
ENSG00000185909	Chromatin interaction
ENSG00000108799	Chromatin interaction
ENSG00000168906	Chromatin interaction
ENSG00000197451	Chromatin interaction
ENSG00000145020	Chromatin interaction

rs_ID	r²[population]
rs13317185	0.82[AFR][1000 genomes]
rs72934230	0.96[AFR][1000 genomes]
rs72934233	0.90[AFR][1000 genomes]
rs9843982	1.00[AMR][1000 genomes]
rs9850501	0.80[AFR][1000 genomes]
rs9879577	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9882557	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49376000-49377600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:49376200-49377400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr3:49376200-49377600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:49376200-49377600	Active TSS	Muscle Satellite Cultured Cells	--
5	chr3:49376200-49377800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:49376200-49377800	Active TSS	Rectal Smooth Muscle	rectum
7	chr3:49376200-49378000	Active TSS	HSMMtube	muscle
8	chr3:49376200-49378200	Active TSS	Fetal Kidney	kidney
9	chr3:49376200-49378600	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr3:49376200-49378600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:49376200-49378600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:49376200-49378600	Active TSS	HSMM	muscle
13	chr3:49376400-49377600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:49376400-49377600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:49376400-49377600	Active TSS	Duodenum Mucosa	Duodenum
16	chr3:49376400-49377600	Active TSS	Esophagus	oesophagus
17	chr3:49376400-49377600	Active TSS	Left Ventricle	heart
18	chr3:49376400-49377600	Active TSS	Stomach Smooth Muscle	stomach
19	chr3:49376400-49377600	Active TSS	NH-A	brain
20	chr3:49376400-49377800	Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr3:49376400-49377800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:49376400-49377800	Active TSS	Brain Anterior Caudate	brain
23	chr3:49376400-49377800	Active TSS	Fetal Intestine Small	intestine
24	chr3:49376400-49377800	Active TSS	GM12878-XiMat	blood
25	chr3:49376400-49377800	Active TSS	K562	blood
26	chr3:49376400-49377800	Active TSS	NHLF	lung
27	chr3:49376400-49378800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:49376600-49377400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
29	chr3:49376600-49377600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:49376600-49377600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:49376600-49377600	Active TSS	Fetal Intestine Large	intestine
32	chr3:49376600-49377600	Active TSS	Fetal Muscle Trunk	muscle
33	chr3:49376600-49377800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:49376600-49377800	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr3:49376600-49377800	Active TSS	Fetal Stomach	stomach
36	chr3:49376600-49377800	Active TSS	Pancreas	Pancrea
37	chr3:49376600-49377800	Active TSS	Right Ventricle	heart
38	chr3:49376600-49377800	Active TSS	Stomach Mucosa	stomach
39	chr3:49376600-49377800	Active TSS	A549	lung
40	chr3:49376600-49377800	Active TSS	NHDF-Ad	bronchial
41	chr3:49376600-49378200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr3:49376600-49378200	Active TSS	H9 Cell Line	embryonic stem cell
43	chr3:49376600-49378200	Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr3:49376600-49378200	Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr3:49376600-49378200	Active TSS	Psoas Muscle	Psoas
46	chr3:49376600-49378400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr3:49376600-49378400	Active TSS	Colonic Mucosa	Colon
48	chr3:49376600-49378400	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr3:49376600-49378400	Active TSS	Right Atrium	heart
50	chr3:49376600-49378600	Active TSS	ES-I3 Cell Line	embryonic stem cell

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