Variant report

Variant	rs72923173
Chromosome Location	chr6:70961396-70961397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10080300	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10081064	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10155684	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10945201	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1200562	0.98[ASN][1000 genomes]
rs1517046	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16868656	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1753251	0.98[ASN][1000 genomes]
rs2273948	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2296004	0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2296009	0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2296931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793070	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806050	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3806059	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3806060	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3806072	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806081	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3828776	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3828777	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs514586	0.98[ASN][1000 genomes]
rs515597	0.98[ASN][1000 genomes]
rs542267	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599793	0.98[ASN][1000 genomes]
rs604874	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs609454	0.98[ASN][1000 genomes]
rs612668	0.98[ASN][1000 genomes]
rs613109	0.98[ASN][1000 genomes]
rs640392	0.98[ASN][1000 genomes]
rs642635	0.98[ASN][1000 genomes]
rs6910140	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72923125	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72923127	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802186	0.95[ASN][1000 genomes]
rs9294861	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9455009	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455010	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455011	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70931400-70961400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:70952200-70964600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:70952200-70980400	Weak transcription	Fetal Stomach	stomach
4	chr6:70952200-70990000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:70952600-70966600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:70952600-70980400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:70952800-70989800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:70955200-70971000	Weak transcription	Fetal Kidney	kidney
9	chr6:70960800-70962000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:70961200-70968000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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