Variant report

Variant	rs72923609
Chromosome Location	chr3:89462701-89462702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1512184	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60080797	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6551411	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6763738	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6782737	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6798377	1.00[AMR][1000 genomes]
rs6809881	0.81[AFR][1000 genomes]
rs72923612	1.00[AMR][1000 genomes]
rs72923614	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7636790	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1008018	chr3:89382031-90254063	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv536639	chr3:89382031-90254063	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1010932	chr3:89424428-90192503	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89458600-89468000	Weak transcription	Left Ventricle	heart
2	chr3:89460800-89521200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:89461200-89463600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:89462600-89462800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:89462600-89463400	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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