Variant report

Variant	rs7292372
Chromosome Location	chr22:29424662-29424663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29420060..29422045-chr22:29423425..29426418,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16986908	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16986912	1.00[ASN][1000 genomes]
rs16986925	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16986971	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16986990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5997413	1.00[ASN][1000 genomes]
rs73882436	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73882438	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8137391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29400600-29425400	Weak transcription	NHEK	skin
2	chr22:29401400-29425000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr22:29401800-29426200	Weak transcription	Colon Smooth Muscle	Colon
4	chr22:29410400-29424800	Weak transcription	Psoas Muscle	Psoas
5	chr22:29415200-29426200	Weak transcription	Aorta	Aorta
6	chr22:29419600-29425000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr22:29419600-29425000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr22:29419600-29425000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr22:29419600-29425600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr22:29419600-29426000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr22:29419600-29426200	Weak transcription	HSMM	muscle
12	chr22:29419800-29425400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr22:29419800-29425800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr22:29419800-29426000	Weak transcription	Fetal Muscle Leg	muscle
15	chr22:29419800-29426200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr22:29419800-29426200	Weak transcription	Ovary	ovary
17	chr22:29419800-29426200	Weak transcription	Right Atrium	heart
18	chr22:29420000-29424800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr22:29420000-29425400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr22:29420000-29425400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr22:29420000-29425400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr22:29420000-29426400	Weak transcription	Esophagus	oesophagus
23	chr22:29420000-29426400	Weak transcription	Left Ventricle	heart
24	chr22:29420000-29426400	Weak transcription	Lung	lung
25	chr22:29420000-29426400	Weak transcription	Right Ventricle	heart
26	chr22:29420600-29424800	Weak transcription	Brain Anterior Caudate	brain
27	chr22:29420600-29425000	Weak transcription	Pancreas	Pancrea
28	chr22:29420600-29425800	Weak transcription	HUVEC	blood vessel
29	chr22:29420600-29426400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr22:29420600-29427800	Weak transcription	Brain Substantia Nigra	brain
31	chr22:29420800-29426200	Weak transcription	Adipose Nuclei	Adipose
32	chr22:29421000-29425600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr22:29421000-29426000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr22:29421600-29426000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr22:29422400-29425600	Genic enhancers	HepG2	liver
36	chr22:29422600-29425000	Strong transcription	Fetal Muscle Trunk	muscle
37	chr22:29422600-29425800	Weak transcription	Fetal Heart	heart
38	chr22:29423000-29425400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr22:29423200-29424800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr22:29423600-29425800	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr22:29423600-29426000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr22:29423600-29426400	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr22:29423800-29425000	Enhancers	Fetal Intestine Small	intestine
44	chr22:29423800-29425400	Enhancers	Placenta	Placenta
45	chr22:29423800-29425800	Enhancers	Liver	Liver
46	chr22:29423800-29426000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr22:29423800-29426000	Enhancers	Duodenum Mucosa	Duodenum
48	chr22:29423800-29426200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr22:29424000-29426000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr22:29424000-29426400	Enhancers	Fetal Lung	lung

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