Variant report

Variant	rs72924862
Chromosome Location	chr4:103211432-103211433
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16996761	1.00[AMR][1000 genomes]
rs16996763	1.00[AMR][1000 genomes]
rs17032317	1.00[AMR][1000 genomes]
rs17032410	1.00[AMR][1000 genomes]
rs17032479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17032490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17032491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17032492	1.00[AMR][1000 genomes]
rs17032496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59755351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72924829	1.00[AMR][1000 genomes]
rs72924833	1.00[AMR][1000 genomes]
rs72924836	1.00[AMR][1000 genomes]
rs72924860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72924870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72924878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103179400-103221000	Weak transcription	K562	blood
2	chr4:103181800-103230400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:103182000-103255400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:103184200-103220600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:103186600-103229600	Weak transcription	Pancreas	Pancrea
6	chr4:103186800-103216800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:103187200-103229400	Weak transcription	Fetal Thymus	thymus
8	chr4:103189000-103216800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:103189200-103225400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr4:103189400-103218600	Weak transcription	Placenta	Placenta
11	chr4:103189800-103232400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:103196200-103242400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr4:103199400-103221000	Weak transcription	Ovary	ovary
14	chr4:103200800-103217600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:103201000-103220000	Weak transcription	GM12878-XiMat	blood
16	chr4:103203600-103226400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:103204000-103228400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr4:103207600-103221200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:103208200-103220600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:103209800-103213000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:103209800-103221200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr4:103210000-103214000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr4:103210200-103211800	Weak transcription	Primary T cells from cord blood	blood
24	chr4:103210400-103220000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr4:103210400-103256800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr4:103210600-103212000	Strong transcription	Primary B cells from cord blood	blood
27	chr4:103210800-103212600	Strong transcription	Liver	Liver
28	chr4:103210800-103212800	Strong transcription	Primary hematopoietic stem cells	blood
29	chr4:103210800-103213800	Strong transcription	Dnd41	blood
30	chr4:103211000-103212800	Strong transcription	Hela-S3	cervix
31	chr4:103211200-103211800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:103211200-103212200	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr4:103211200-103216600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr4:103211200-103217800	Weak transcription	Rectal Mucosa Donor 29	rectum

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