Variant report

Variant	rs72925369
Chromosome Location	chr4:128062475-128062476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs72923280	1.00[AFR][1000 genomes]
rs72923288	1.00[AFR][1000 genomes]
rs72925359	1.00[AFR][1000 genomes]
rs72927223	1.00[AFR][1000 genomes]
rs72927268	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128060000-128062600	Weak transcription	HSMM	muscle
2	chr4:128060000-128063000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:128060200-128062600	Weak transcription	HSMMtube	muscle
4	chr4:128061000-128063400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:128061000-128063600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:128061000-128065600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:128061200-128063600	Enhancers	Hela-S3	cervix
8	chr4:128061200-128064000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:128061200-128067800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:128061400-128062800	Weak transcription	NHLF	lung
11	chr4:128061600-128062600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:128061800-128063000	Weak transcription	NH-A	brain
13	chr4:128062000-128063800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:128062200-128062600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:128062400-128064000	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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