Variant report

Variant	rs72925705
Chromosome Location	chr3:90213771-90213772
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs11128081	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11917293	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11918512	1.00[EUR][1000 genomes]
rs11920640	1.00[EUR][1000 genomes]
rs11924267	1.00[EUR][1000 genomes]
rs11926877	1.00[EUR][1000 genomes]
rs12106840	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12107978	1.00[EUR][1000 genomes]
rs12107987	1.00[EUR][1000 genomes]
rs1402829	1.00[EUR][1000 genomes]
rs1402830	1.00[EUR][1000 genomes]
rs1402831	1.00[EUR][1000 genomes]
rs1521801	1.00[EUR][1000 genomes]
rs1521805	1.00[EUR][1000 genomes]
rs1915788	1.00[EUR][1000 genomes]
rs1996783	1.00[EUR][1000 genomes]
rs1996784	1.00[EUR][1000 genomes]
rs2204079	1.00[EUR][1000 genomes]
rs55719953	1.00[EUR][1000 genomes]
rs55726199	1.00[EUR][1000 genomes]
rs56257056	1.00[EUR][1000 genomes]
rs56971856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57237979	1.00[EUR][1000 genomes]
rs57268246	1.00[EUR][1000 genomes]
rs57530512	1.00[EUR][1000 genomes]
rs57742239	1.00[EUR][1000 genomes]
rs57945456	1.00[EUR][1000 genomes]
rs57953580	1.00[EUR][1000 genomes]
rs58442773	1.00[EUR][1000 genomes]
rs58444511	1.00[EUR][1000 genomes]
rs58944054	1.00[EUR][1000 genomes]
rs58977999	1.00[EUR][1000 genomes]
rs59147897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59297554	1.00[EUR][1000 genomes]
rs59437743	1.00[EUR][1000 genomes]
rs59649185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59827615	1.00[EUR][1000 genomes]
rs60834002	1.00[EUR][1000 genomes]
rs61037499	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6551449	1.00[EUR][1000 genomes]
rs6770945	1.00[EUR][1000 genomes]
rs6772724	1.00[EUR][1000 genomes]
rs6780268	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6782153	1.00[EUR][1000 genomes]
rs6789628	1.00[EUR][1000 genomes]
rs6789752	1.00[EUR][1000 genomes]
rs6793888	1.00[EUR][1000 genomes]
rs6798554	1.00[EUR][1000 genomes]
rs6800705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6804358	1.00[EUR][1000 genomes]
rs72921826	1.00[EUR][1000 genomes]
rs72921827	1.00[EUR][1000 genomes]
rs72921828	1.00[EUR][1000 genomes]
rs72921847	1.00[EUR][1000 genomes]
rs72921850	1.00[EUR][1000 genomes]
rs72921853	1.00[EUR][1000 genomes]
rs72921855	1.00[EUR][1000 genomes]
rs72921864	1.00[EUR][1000 genomes]
rs72921866	1.00[EUR][1000 genomes]
rs72921873	1.00[EUR][1000 genomes]
rs72921876	1.00[EUR][1000 genomes]
rs72923735	1.00[EUR][1000 genomes]
rs72923736	1.00[EUR][1000 genomes]
rs72923737	1.00[EUR][1000 genomes]
rs72923739	1.00[EUR][1000 genomes]
rs72923741	1.00[EUR][1000 genomes]
rs72923755	1.00[EUR][1000 genomes]
rs72923757	1.00[EUR][1000 genomes]
rs72923762	1.00[EUR][1000 genomes]
rs72923764	1.00[EUR][1000 genomes]
rs72923765	1.00[EUR][1000 genomes]
rs72923767	1.00[EUR][1000 genomes]
rs72923770	1.00[EUR][1000 genomes]
rs72923771	1.00[EUR][1000 genomes]
rs72923776	1.00[EUR][1000 genomes]
rs72923777	1.00[EUR][1000 genomes]
rs72923779	1.00[EUR][1000 genomes]
rs72923781	1.00[EUR][1000 genomes]
rs72923783	0.81[AFR][1000 genomes]
rs72923784	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72923786	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72923794	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925799	1.00[EUR][1000 genomes]
rs73846008	1.00[EUR][1000 genomes]
rs73849912	1.00[EUR][1000 genomes]
rs7610765	1.00[EUR][1000 genomes]
rs7619437	1.00[EUR][1000 genomes]
rs7626330	0.81[AFR][1000 genomes]
rs7627792	1.00[EUR][1000 genomes]
rs7637541	1.00[EUR][1000 genomes]
rs7648089	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7648275	0.81[AFR][1000 genomes]
rs7648900	1.00[EUR][1000 genomes]
rs9818065	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008018	chr3:89382031-90254063	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536639	chr3:89382031-90254063	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv530024	chr3:89548440-90304841	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv590970	chr3:89987871-90441306	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv965184	chr3:90202286-90234890	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:90213000-90213800	Enhancers	Fetal Lung	lung
2	chr3:90213000-90214200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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