Variant report

Variant	rs72926475
Chromosome Location	chr2:86594487-86594488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17027163	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17027169	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55896146	0.86[EUR][1000 genomes]
rs56194753	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56233501	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61629709	0.86[EUR][1000 genomes]
rs6728272	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72926457	0.86[EUR][1000 genomes]
rs72926466	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86588400-86595200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:86593000-86596000	Enhancers	Fetal Intestine Small	intestine
3	chr2:86593400-86595400	Enhancers	Duodenum Mucosa	Duodenum
4	chr2:86593400-86596000	Enhancers	Fetal Intestine Large	intestine
5	chr2:86593400-86596000	Enhancers	Pancreas	Pancrea
6	chr2:86594000-86595200	Enhancers	Liver	Liver
7	chr2:86594000-86596000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:86594000-86596000	Enhancers	Right Ventricle	heart
9	chr2:86594200-86594800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:86594200-86595400	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr2:86594200-86595400	Enhancers	HepG2	liver
12	chr2:86594200-86595600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:86594200-86596000	Enhancers	Primary hematopoietic stem cells	blood
14	chr2:86594200-86596000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr2:86594200-86596000	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr2:86594400-86594800	Weak transcription	Stomach Mucosa	stomach
17	chr2:86594400-86596200	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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