Variant report

Variant	rs72926969
Chromosome Location	chr2:85973405-85973406
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:85971555..85973633-chr2:85979812..85981943,2	K562	blood:
2	chr2:85970891..85973881-chr2:85976191..85979014,2	K562	blood:
3	chr2:85972115..85974946-chr2:85980100..85981660,2	MCF-7	breast:
4	chr2:85971643..85974209-chr2:85976098..85978084,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168874	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60305447	1.00[AMR][1000 genomes]
rs60333657	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874468	chr2:85926598-86001255	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1012593	chr2:85966323-85997189	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85968000-85974600	Enhancers	Left Ventricle	heart
2	chr2:85968200-85973800	Enhancers	Right Ventricle	heart
3	chr2:85968200-85974200	Enhancers	Right Atrium	heart
4	chr2:85969600-85973600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:85969600-85974200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:85969800-85973800	Enhancers	Brain Angular Gyrus	brain
7	chr2:85969800-85973800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr2:85970400-85974000	Enhancers	Fetal Lung	lung
9	chr2:85970400-85974000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr2:85971200-85974200	Enhancers	A549	lung
11	chr2:85971600-85975400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr2:85971600-85977800	Weak transcription	Pancreas	Pancrea
13	chr2:85972200-85976200	Weak transcription	Gastric	stomach
14	chr2:85972400-85973600	Enhancers	Placenta	Placenta
15	chr2:85972400-85975800	Weak transcription	Hela-S3	cervix
16	chr2:85972400-85976200	Weak transcription	Stomach Mucosa	stomach
17	chr2:85972400-85976800	Enhancers	Primary B cells from cord blood	blood
18	chr2:85972400-85978200	Enhancers	Primary B cells from peripheral blood	blood
19	chr2:85972600-85973800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr2:85972600-85973800	Bivalent Enhancer	Fetal Stomach	stomach
21	chr2:85972600-85974000	Enhancers	NHDF-Ad	bronchial
22	chr2:85972800-85973800	Enhancers	Adipose Nuclei	Adipose
23	chr2:85972800-85973800	Enhancers	Colon Smooth Muscle	Colon
24	chr2:85972800-85973800	Enhancers	Ovary	ovary
25	chr2:85972800-85973800	Enhancers	Psoas Muscle	Psoas
26	chr2:85972800-85973800	Weak transcription	GM12878-XiMat	blood
27	chr2:85972800-85974000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr2:85972800-85974000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr2:85972800-85974200	Enhancers	Brain Cingulate Gyrus	brain
30	chr2:85972800-85974800	Enhancers	Brain Substantia Nigra	brain
31	chr2:85972800-85975400	Weak transcription	Liver	Liver
32	chr2:85972800-85975600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr2:85972800-85975800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:85972800-85976000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr2:85972800-85977800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr2:85973000-85973600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr2:85973000-85973600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr2:85973000-85973600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr2:85973000-85973800	Enhancers	Brain Anterior Caudate	brain
40	chr2:85973000-85973800	Enhancers	Brain Hippocampus Middle	brain
41	chr2:85973000-85973800	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr2:85973000-85973800	Enhancers	Stomach Smooth Muscle	stomach
43	chr2:85973000-85973800	Enhancers	HSMM	muscle
44	chr2:85973000-85973800	Enhancers	NHLF	lung
45	chr2:85973000-85974000	Enhancers	Osteobl	bone
46	chr2:85973000-85974200	Enhancers	Fetal Thymus	thymus
47	chr2:85973000-85974800	Enhancers	Muscle Satellite Cultured Cells	--
48	chr2:85973000-85975000	Weak transcription	HSMMtube	muscle
49	chr2:85973000-85977800	Weak transcription	Brain Germinal Matrix	brain
50	chr2:85973000-85979000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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