Variant report

Variant	rs72929946
Chromosome Location	chr2:56682575-56682576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13406857	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57160131	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58798272	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59237961	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60292273	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925125	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925126	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925131	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925133	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925143	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925146	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925148	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925149	1.00[EUR][1000 genomes]
rs72925151	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925160	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925162	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925166	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925170	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72925175	0.83[EUR][1000 genomes]
rs72925177	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72925183	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72925185	0.83[AMR][1000 genomes]
rs72925189	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72929941	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72929950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72931992	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72933916	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72933918	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72933922	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72933940	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72933941	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv874172	chr2:56638856-56811749	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2757800	chr2:56659685-56851198	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2759052	chr2:56659685-56851198	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56676000-56682800	Weak transcription	Pancreas	Pancrea

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