The 2.0 version of rSNPBase

Variant report

Variant rs72930080
Chromosome Location chr2:39682888-39682889
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:39665200-39696000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:39665600-39684200 Weak transcription Lung lung
3 chr2:39665600-39685600 Weak transcription Left Ventricle heart
4 chr2:39665600-39694600 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr2:39665600-39694800 Weak transcription Pancreas Pancrea
6 chr2:39666200-39696600 Weak transcription Brain Inferior Temporal Lobe brain
7 chr2:39667000-39694600 Weak transcription HSMMtube muscle
8 chr2:39667200-39685200 Weak transcription NHEK skin
9 chr2:39667200-39694600 Weak transcription NHLF lung
10 chr2:39667200-39694800 Weak transcription Brain Angular Gyrus brain
11 chr2:39667200-39696400 Weak transcription Fetal Heart heart
12 chr2:39667400-39694600 Weak transcription Rectal Smooth Muscle rectum
13 chr2:39667400-39694600 Weak transcription Stomach Smooth Muscle stomach
14 chr2:39668200-39684800 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr2:39668200-39685000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr2:39668200-39694800 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr2:39668200-39696800 Weak transcription Right Ventricle heart
18 chr2:39670400-39685000 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr2:39670800-39684800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr2:39671200-39685000 Weak transcription Aorta Aorta
21 chr2:39672200-39684600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr2:39675000-39696400 Weak transcription Fetal Kidney kidney
23 chr2:39675200-39686000 Weak transcription NHDF-Ad bronchial
24 chr2:39675400-39694600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr2:39676000-39684800 Weak transcription Fetal Intestine Small intestine
26 chr2:39677200-39687400 Weak transcription Colon Smooth Muscle Colon
27 chr2:39678000-39696800 Weak transcription H9 Cell Line embryonic stem cell
28 chr2:39678200-39694600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr2:39680800-39683800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr2:39680800-39684200 Weak transcription Primary T cells from cord blood blood
31 chr2:39680800-39684800 Weak transcription Primary T helper cells fromperipheralblood blood
32 chr2:39681000-39683400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr2:39681000-39686200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr2:39681200-39683200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr2:39681400-39683000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr2:39681400-39683400 Strong transcription Primary hematopoietic stem cells short term culture blood
37 chr2:39681400-39683400 Strong transcription Fetal Intestine Large intestine
38 chr2:39681600-39683200 Strong transcription Duodenum Smooth Muscle Duodenum
39 chr2:39681600-39683200 Strong transcription Ovary ovary
40 chr2:39681800-39685000 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr2:39682000-39683200 Strong transcription Brain Cingulate Gyrus brain
42 chr2:39682000-39683200 Strong transcription HepG2 liver
43 chr2:39682000-39683200 Strong transcription HSMM muscle
44 chr2:39682000-39684800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr2:39682200-39683000 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr2:39682200-39683400 Strong transcription Primary hematopoietic stem cells blood
47 chr2:39682200-39683400 Enhancers NH-A brain
48 chr2:39682200-39692000 Weak transcription Fetal Lung lung
49 chr2:39682200-39695600 Weak transcription Fetal Brain Male brain
50 chr2:39682400-39686000 Weak transcription Liver Liver

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Last update: Aug 31, 2015