The 2.0 version of rSNPBase

Variant report

Variant rs72931172
Chromosome Location chr2:39675739-39675740
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:39665200-39696000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:39665600-39681600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr2:39665600-39684200 Weak transcription Lung lung
4 chr2:39665600-39685600 Weak transcription Left Ventricle heart
5 chr2:39665600-39694600 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr2:39665600-39694800 Weak transcription Pancreas Pancrea
7 chr2:39666000-39681200 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr2:39666200-39681400 Weak transcription Fetal Intestine Large intestine
9 chr2:39666200-39696600 Weak transcription Brain Inferior Temporal Lobe brain
10 chr2:39666600-39675800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr2:39666600-39682200 Weak transcription Fetal Muscle Leg muscle
12 chr2:39666800-39677800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr2:39666800-39681000 Weak transcription Brain Substantia Nigra brain
14 chr2:39666800-39681600 Weak transcription Ovary ovary
15 chr2:39667000-39681400 Weak transcription Duodenum Mucosa Duodenum
16 chr2:39667000-39681600 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr2:39667000-39694600 Weak transcription HSMMtube muscle
18 chr2:39667200-39685200 Weak transcription NHEK skin
19 chr2:39667200-39694600 Weak transcription NHLF lung
20 chr2:39667200-39694800 Weak transcription Brain Angular Gyrus brain
21 chr2:39667200-39696400 Weak transcription Fetal Heart heart
22 chr2:39667400-39682000 Weak transcription HSMM muscle
23 chr2:39667400-39694600 Weak transcription Rectal Smooth Muscle rectum
24 chr2:39667400-39694600 Weak transcription Stomach Smooth Muscle stomach
25 chr2:39668200-39681400 Weak transcription Skeletal Muscle Male skeletal muscle
26 chr2:39668200-39684800 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr2:39668200-39685000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr2:39668200-39694800 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr2:39668200-39696800 Weak transcription Right Ventricle heart
30 chr2:39668400-39676000 Weak transcription Placenta Placenta
31 chr2:39668400-39677000 Weak transcription K562 blood
32 chr2:39670400-39682800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr2:39670400-39685000 Weak transcription ES-I3 Cell Line embryonic stem cell
34 chr2:39670800-39684800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr2:39671000-39682200 Weak transcription Primary hematopoietic stem cells blood
36 chr2:39671200-39681200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr2:39671200-39685000 Weak transcription Aorta Aorta
38 chr2:39671600-39682600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr2:39671800-39682000 Weak transcription Brain Cingulate Gyrus brain
40 chr2:39672000-39681400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr2:39672200-39681400 Weak transcription Adipose Nuclei Adipose
42 chr2:39672200-39684600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr2:39672600-39681400 Weak transcription Primary hematopoietic stem cells short term culture blood
44 chr2:39673400-39676200 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr2:39673400-39681000 Weak transcription Liver Liver
46 chr2:39673600-39681000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr2:39674800-39678800 Enhancers HepG2 liver
48 chr2:39675000-39675800 Flanking Active TSS A549 lung
49 chr2:39675000-39696400 Weak transcription Fetal Kidney kidney
50 chr2:39675200-39677800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015