Variant report

Variant	rs72932510
Chromosome Location	chr3:100528666-100528667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs72930692	0.95[AFR][1000 genomes]
rs72930698	1.00[AFR][1000 genomes]
rs72930700	1.00[AFR][1000 genomes]
rs72932503	1.00[AFR][1000 genomes]
rs72932504	1.00[AFR][1000 genomes]
rs72932505	1.00[AFR][1000 genomes]
rs72932518	1.00[AFR][1000 genomes]
rs72932521	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798221	chr3:100518650-100536284	Genic enhancers Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100502400-100530400	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:100505200-100558200	Weak transcription	Ovary	ovary
3	chr3:100505200-100582800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:100506000-100548400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:100514200-100547600	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:100514400-100529000	Weak transcription	HSMMtube	muscle
7	chr3:100516000-100572200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:100517400-100594400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:100518800-100543000	Weak transcription	Fetal Stomach	stomach
10	chr3:100519600-100530600	Weak transcription	Left Ventricle	heart
11	chr3:100523800-100529400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:100524000-100529000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:100524200-100529000	Weak transcription	HSMM	muscle
14	chr3:100524200-100529200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:100524200-100537200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:100527200-100529000	Weak transcription	NHDF-Ad	bronchial
17	chr3:100527800-100529800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:100528400-100529000	Weak transcription	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links