Variant report

Variant	rs72933892
Chromosome Location	chr1:78461313-78461314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:78460274..78462084-chr1:78542241..78544116,2	MCF-7	breast:
2	chr1:78443179..78446680-chr1:78459475..78463180,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137960	Chromatin interaction
ENSG00000162613	Chromatin interaction
ENSG00000162616	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11162404	1.00[AMR][1000 genomes]
rs12086102	1.00[AMR][1000 genomes]
rs72933898	1.00[AMR][1000 genomes]
rs7514180	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794082	chr1:78102426-78492221	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	esv3434340	chr1:78153780-78607103	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78446200-78469600	Weak transcription	Thymus	Thymus
2	chr1:78446400-78469800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:78446400-78470200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:78446600-78468000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:78446600-78468400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:78446600-78468800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:78446600-78468800	Weak transcription	Adipose Nuclei	Adipose
8	chr1:78446600-78468800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:78446600-78469000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:78446600-78469000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:78446600-78469000	Weak transcription	Fetal Kidney	kidney
12	chr1:78446600-78469600	Weak transcription	Aorta	Aorta
13	chr1:78446600-78469800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr1:78446600-78470200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr1:78446600-78470400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr1:78446800-78468000	Weak transcription	Fetal Lung	lung
17	chr1:78447000-78467800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:78447200-78463600	Weak transcription	Lung	lung
19	chr1:78447400-78465800	Weak transcription	Hela-S3	cervix
20	chr1:78447600-78469800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr1:78447600-78470200	Weak transcription	Fetal Brain Male	brain
22	chr1:78447800-78469600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:78448000-78467800	Weak transcription	Dnd41	blood
24	chr1:78448000-78467800	Weak transcription	HUVEC	blood vessel
25	chr1:78448000-78468800	Weak transcription	Brain Hippocampus Middle	brain
26	chr1:78448600-78465400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:78448800-78488200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:78450200-78469600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:78450200-78469600	Weak transcription	Fetal Intestine Large	intestine
30	chr1:78451000-78468400	Weak transcription	Brain Anterior Caudate	brain
31	chr1:78451800-78468400	Weak transcription	HSMMtube	muscle
32	chr1:78452200-78465800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:78452400-78468800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr1:78452400-78468800	Weak transcription	Colon Smooth Muscle	Colon
35	chr1:78452800-78466000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr1:78452800-78466000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr1:78452800-78468400	Weak transcription	K562	blood
38	chr1:78452800-78468800	Weak transcription	NH-A	brain
39	chr1:78452800-78470400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr1:78452800-78478800	Weak transcription	Spleen	Spleen
41	chr1:78453000-78466000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr1:78453000-78469600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:78453800-78462800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:78454000-78462600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr1:78454000-78462800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr1:78454200-78468400	Weak transcription	Right Atrium	heart
47	chr1:78454200-78468800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr1:78454200-78469200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr1:78454200-78469800	Weak transcription	Left Ventricle	heart
50	chr1:78454200-78469800	Weak transcription	Psoas Muscle	Psoas

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