Variant report

Variant	rs72934634
Chromosome Location	chr3:98515116-98515117
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:98505121..98508904-chr3:98514678..98518486,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1729991	1.00[AMR][1000 genomes]
rs57266345	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59684850	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61228839	0.87[AFR][1000 genomes]
rs72930963	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72930970	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72930975	1.00[AMR][1000 genomes]
rs72934618	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936606	0.95[AFR][1000 genomes]
rs72936636	0.87[AFR][1000 genomes]
rs72936671	0.83[AFR][1000 genomes]
rs72936680	0.83[AFR][1000 genomes]
rs72938508	0.87[AFR][1000 genomes]
rs72938510	0.87[AFR][1000 genomes]
rs72938569	0.87[AFR][1000 genomes]
rs72940503	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390386	chr3:98174549-98579953	Genic enhancers Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1009032	chr3:98514221-98607721	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98478800-98515200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:98483000-98517600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:98483200-98518000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:98484200-98515200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:98484800-98529800	Weak transcription	Primary B cells from cord blood	blood
6	chr3:98490200-98525200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:98492200-98517800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:98497000-98524600	Weak transcription	Fetal Brain Male	brain
9	chr3:98497800-98517200	Weak transcription	Fetal Brain Female	brain
10	chr3:98498000-98516600	Weak transcription	Stomach Mucosa	stomach
11	chr3:98499200-98516600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:98499600-98516600	Weak transcription	Brain Angular Gyrus	brain
13	chr3:98502200-98519800	Weak transcription	Fetal Kidney	kidney
14	chr3:98502200-98523800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:98502400-98523800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:98503400-98518200	Weak transcription	Ovary	ovary
17	chr3:98503400-98576400	Weak transcription	Gastric	stomach
18	chr3:98503600-98523800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:98504600-98517000	Weak transcription	HSMMtube	muscle
20	chr3:98504600-98519400	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:98504600-98534800	Weak transcription	Small Intestine	intestine
22	chr3:98504800-98517400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:98505000-98515200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:98505000-98525600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr3:98505400-98515200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:98505400-98518400	Weak transcription	Fetal Thymus	thymus
27	chr3:98505400-98523800	Weak transcription	Pancreas	Pancrea
28	chr3:98505400-98524400	Weak transcription	Thymus	Thymus
29	chr3:98505800-98524600	Weak transcription	Psoas Muscle	Psoas
30	chr3:98506000-98515200	Weak transcription	Aorta	Aorta
31	chr3:98506200-98515600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr3:98506200-98518000	Weak transcription	Fetal Intestine Large	intestine
33	chr3:98506400-98515600	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr3:98506400-98516400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr3:98506400-98519400	Weak transcription	Brain Anterior Caudate	brain
36	chr3:98506400-98524400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr3:98506600-98515400	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr3:98506800-98523800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr3:98507800-98517400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:98507800-98517400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr3:98507800-98518200	Weak transcription	Right Ventricle	heart
42	chr3:98507800-98529000	Weak transcription	Brain Substantia Nigra	brain
43	chr3:98508000-98516600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr3:98508000-98519600	Weak transcription	Fetal Lung	lung
45	chr3:98508000-98524600	Weak transcription	GM12878-XiMat	blood
46	chr3:98508200-98524600	Weak transcription	Fetal Heart	heart
47	chr3:98509000-98516200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:98511400-98516400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr3:98511400-98518400	Weak transcription	Fetal Muscle Leg	muscle
50	chr3:98512200-98515200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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