Variant report

Variant	rs72935217
Chromosome Location	chr3:110109475-110109476
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11915961	1.00[AMR][1000 genomes]
rs11926648	1.00[AMR][1000 genomes]
rs56786256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59758035	1.00[AMR][1000 genomes]
rs61631227	0.95[AFR][1000 genomes]
rs72935215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935287	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935288	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935289	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935290	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937206	1.00[AMR][1000 genomes]
rs72939265	1.00[AMR][1000 genomes]
rs72941111	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460818	chr3:110007205-110155824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591272	chr3:110007205-110155824	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv460819	chr3:110080893-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877336	chr3:110083045-110143891	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv470838	chr3:110083045-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv591273	chr3:110087264-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv877337	chr3:110091627-110186611	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110101400-110110600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:110103800-110110000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:110105200-110110800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:110106000-110109800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:110108600-110111200	Enhancers	HUVEC	blood vessel
6	chr3:110108800-110111400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:110109000-110111200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:110109400-110110200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:110109400-110110600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:110109400-110111400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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