Variant report

Variant	rs7293523
Chromosome Location	chr6:61881598-61881599
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4438991	1.00[AMR][1000 genomes]
rs73464618	1.00[AMR][1000 genomes]
rs73464654	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73481507	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73481536	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73481537	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73481557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965645	chr6:61880167-62096129	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv18613	chr6:61880260-61969732	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv19219	chr6:61880260-62128238	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:61880200-61882000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr6:61880200-61882200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:61880800-61884400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr6:61881200-61882200	ZNF genes & repeats	Liver	Liver
5	chr6:61881400-61881800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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