Variant report

Variant	rs72935441
Chromosome Location	chr4:104348041-104348042
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57010156	0.95[AFR][1000 genomes]
rs72935436	0.95[AFR][1000 genomes]
rs72935440	0.95[AFR][1000 genomes]
rs72935443	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015023	chr4:104039145-104565217	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3348747	chr4:104214627-104609795	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv879687	chr4:104288620-104371785	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830023	chr4:104333042-104522801	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv980510	chr4:104339939-104350198	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:104344800-104349000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:104346000-104348200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:104346200-104348200	Active TSS	Liver	Liver
4	chr4:104346800-104350800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:104347000-104348800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:104347000-104348800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:104347000-104350000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:104347000-104350800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:104347200-104350200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:104347600-104350000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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