Variant report

Variant	rs72935604
Chromosome Location	chr1:79089926-79089927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr1:79089839-79090177	GM12878	blood:	n/a	n/a
2	POLR2A	chr1:79088136-79090965	GM12878	blood:	n/a	n/a
3	POLR2A	chr1:79084977-79091295	GM12891	blood:	n/a	n/a
4	POLR2A	chr1:79089114-79090096	GM12878	blood:	n/a	n/a
5	POLR2A	chr1:79089094-79090888	GM12878	blood:	n/a	n/a
6	CHD1	chr1:79088870-79090060	GM12878	blood:	n/a	n/a
7	TBL1XR1	chr1:79089910-79090034	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
IFI44L	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs74091476	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv830315	chr1:79008443-79200591	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79085200-79090000	Active TSS	Left Ventricle	heart
2	chr1:79086600-79091200	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr1:79086800-79090600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:79086800-79090800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:79086800-79090800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:79086800-79092200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:79086800-79092800	Weak transcription	NHDF-Ad	bronchial
8	chr1:79086800-79092800	Weak transcription	Osteobl	bone
9	chr1:79086800-79108800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:79087200-79097400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr1:79088400-79094000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:79088600-79090000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr1:79088600-79091200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr1:79088600-79110600	Weak transcription	Fetal Thymus	thymus
15	chr1:79088800-79090800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:79088800-79091000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:79088800-79092600	Weak transcription	Brain Substantia Nigra	brain
18	chr1:79088800-79095400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr1:79089000-79090000	Enhancers	Primary T cells from cord blood	blood
20	chr1:79089000-79090000	Enhancers	Primary T cells fromperipheralblood	blood
21	chr1:79089000-79090000	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr1:79089000-79090800	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr1:79089000-79095800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:79089400-79094200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr1:79089400-79094400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr1:79089400-79098800	Weak transcription	Fetal Muscle Leg	muscle
27	chr1:79089400-79107200	Weak transcription	Ovary	ovary
28	chr1:79089600-79090600	Weak transcription	Adipose Nuclei	Adipose
29	chr1:79089600-79093600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr1:79089600-79098800	Weak transcription	Aorta	Aorta
31	chr1:79089800-79090000	Enhancers	Psoas Muscle	Psoas
32	chr1:79089800-79090200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr1:79089800-79090400	Active TSS	GM12878-XiMat	blood
34	chr1:79089800-79093600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr1:79089800-79115000	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links