Variant report

Variant	rs72935885
Chromosome Location	chr3:101473495-101473496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101445300..101447876-chr3:101472535..101474338,2	K562	blood:

Variant related genes	Relation type
ENSG00000182504	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72935893	1.00[AFR][1000 genomes]
rs72935896	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101445600-101497400	Weak transcription	Fetal Heart	heart
2	chr3:101451800-101476600	Weak transcription	Psoas Muscle	Psoas
3	chr3:101453400-101478400	Weak transcription	Small Intestine	intestine
4	chr3:101453800-101473600	Weak transcription	HSMMtube	muscle
5	chr3:101453800-101474200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:101453800-101487000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:101454000-101474000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:101454200-101474200	Weak transcription	HMEC	breast
9	chr3:101454600-101476400	Weak transcription	NHEK	skin
10	chr3:101454600-101476600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:101454800-101474200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:101454800-101476600	Weak transcription	A549	lung
13	chr3:101455200-101476600	Weak transcription	Pancreas	Pancrea
14	chr3:101455400-101474200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:101455400-101474200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:101455400-101474200	Weak transcription	Aorta	Aorta
17	chr3:101455400-101474200	Weak transcription	Brain Angular Gyrus	brain
18	chr3:101455400-101474200	Weak transcription	Brain Substantia Nigra	brain
19	chr3:101455400-101474200	Weak transcription	Colonic Mucosa	Colon
20	chr3:101455400-101474200	Weak transcription	Esophagus	oesophagus
21	chr3:101455400-101474200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr3:101455400-101474400	Weak transcription	Ovary	ovary
23	chr3:101455400-101474400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr3:101455400-101474600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr3:101455400-101476200	Weak transcription	NHLF	lung
26	chr3:101455400-101476600	Weak transcription	Right Ventricle	heart
27	chr3:101455400-101476600	Weak transcription	K562	blood
28	chr3:101455400-101477800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr3:101455600-101474000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:101455600-101474000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:101455600-101474000	Weak transcription	Thymus	Thymus
32	chr3:101455600-101474200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:101455600-101474200	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr3:101455600-101474200	Weak transcription	GM12878-XiMat	blood
35	chr3:101455600-101476800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:101455800-101473800	Weak transcription	Primary B cells from peripheral blood	blood
37	chr3:101455800-101473800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr3:101455800-101473800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr3:101455800-101474000	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr3:101455800-101474000	Weak transcription	Placenta	Placenta
41	chr3:101455800-101474200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:101455800-101474200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:101455800-101474200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:101455800-101474200	Weak transcription	Adipose Nuclei	Adipose
45	chr3:101455800-101474200	Weak transcription	Liver	Liver
46	chr3:101455800-101474200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr3:101455800-101474200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr3:101455800-101474400	Weak transcription	Spleen	Spleen
49	chr3:101455800-101475400	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr3:101456000-101473600	Weak transcription	Osteobl	bone

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