Variant report

Variant	rs72935927
Chromosome Location	chr6:110616710-110616711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2334321	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72935918	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1847660	chr6:110606987-110985314	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110605000-110617400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:110605400-110617200	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:110609400-110617000	Weak transcription	Fetal Kidney	kidney
4	chr6:110609400-110632000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:110610000-110632200	Weak transcription	Pancreas	Pancrea
6	chr6:110610200-110617000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:110616200-110616800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr6:110616200-110617600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:110616400-110617000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:110616400-110617000	Strong transcription	Aorta	Aorta
11	chr6:110616400-110619200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:110616600-110616800	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:110616600-110616800	Enhancers	Ovary	ovary
14	chr6:110616600-110617200	Enhancers	Brain Germinal Matrix	brain
15	chr6:110616600-110617400	Enhancers	Primary T cells from cord blood	blood
16	chr6:110616600-110617400	Enhancers	Brain Anterior Caudate	brain
17	chr6:110616600-110617600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:110616600-110617600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:110616600-110617800	Enhancers	Primary hematopoietic stem cells	blood
20	chr6:110616600-110617800	Enhancers	Fetal Stomach	stomach
21	chr6:110616600-110618600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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