Variant report

Variant	rs72936024
Chromosome Location	chr3:49667186-49667187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:49664437..49667415-chr3:49710388..49712286,2	K562	blood:
2	chr3:49666595..49669232-chr3:49671512..49673692,2	K562	blood:
3	chr3:49666488..49668184-chr3:49675281..49676977,2	K562	blood:

Variant related genes	Relation type
ENSG00000164062	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72936026	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508217	chr3:49615446-49769896	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1011428	chr3:49649989-49706068	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49654400-49668200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:49655000-49668800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:49655600-49676200	Weak transcription	HepG2	liver
4	chr3:49657600-49685400	Weak transcription	Brain Substantia Nigra	brain
5	chr3:49660800-49682600	Weak transcription	Liver	Liver
6	chr3:49661000-49669200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:49661600-49692400	Weak transcription	Ovary	ovary
8	chr3:49661800-49682200	Weak transcription	Fetal Brain Male	brain
9	chr3:49662000-49667600	Strong transcription	Brain Germinal Matrix	brain
10	chr3:49662600-49668600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:49662800-49668400	Weak transcription	Lung	lung
12	chr3:49662800-49685000	Weak transcription	Right Ventricle	heart
13	chr3:49663800-49679600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr3:49664200-49668200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:49664200-49669000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:49664200-49683200	Weak transcription	Pancreas	Pancrea
17	chr3:49664400-49668200	Weak transcription	NH-A	brain
18	chr3:49664600-49667800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:49664600-49674000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:49664600-49680000	Weak transcription	Brain Hippocampus Middle	brain
21	chr3:49665000-49672400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:49665200-49668800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:49665600-49673800	Weak transcription	Brain Angular Gyrus	brain
24	chr3:49666800-49667400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:49666800-49667600	Genic enhancers	Fetal Brain Female	brain
26	chr3:49667000-49667200	Enhancers	Brain Anterior Caudate	brain
27	chr3:49667000-49667800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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