Variant report

Variant	rs72936059
Chromosome Location	chr3:49793878-49793879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49791928..49793924-chr3:49807160..49809101,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1110295	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17050885	1.00[AMR][1000 genomes]
rs2234384	0.80[AFR][1000 genomes]
rs59325781	1.00[AMR][1000 genomes]
rs61689372	1.00[AMR][1000 genomes]
rs72936049	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938108	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49762600-49809000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:49775600-49817000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr3:49775800-49810200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr3:49775800-49823000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:49776200-49799000	Weak transcription	Fetal Heart	heart
6	chr3:49776200-49802000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr3:49776400-49794400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:49776400-49797400	Weak transcription	Small Intestine	intestine
9	chr3:49776400-49812000	Weak transcription	HSMM	muscle
10	chr3:49776400-49812200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:49776400-49812600	Weak transcription	Gastric	stomach
12	chr3:49776400-49818000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:49776400-49818000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:49776400-49818200	Weak transcription	Fetal Kidney	kidney
15	chr3:49776600-49812000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:49782600-49814000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:49783800-49794400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:49785200-49807200	Weak transcription	Hela-S3	cervix
19	chr3:49785600-49794400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:49785600-49794600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr3:49785600-49822400	Weak transcription	HSMMtube	muscle
22	chr3:49785600-49822600	Weak transcription	Esophagus	oesophagus
23	chr3:49785800-49807400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:49785800-49811200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr3:49785800-49812400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:49785800-49818000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr3:49786000-49807200	Weak transcription	Fetal Brain Female	brain
28	chr3:49786000-49812400	Weak transcription	NHEK	skin
29	chr3:49786000-49812600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr3:49786000-49812800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr3:49786000-49814400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr3:49786000-49823000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr3:49786200-49794600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:49786200-49794600	Weak transcription	Right Ventricle	heart
35	chr3:49786200-49796600	Weak transcription	Brain Hippocampus Middle	brain
36	chr3:49786200-49796800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr3:49786200-49797400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr3:49786200-49801800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr3:49786200-49806800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr3:49786200-49807400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr3:49786200-49812000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:49786200-49812600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr3:49786200-49812600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr3:49786200-49822400	Weak transcription	HMEC	breast
45	chr3:49786400-49817800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:49786600-49797000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr3:49786600-49807400	Weak transcription	Aorta	Aorta
48	chr3:49786600-49812800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:49786600-49817800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr3:49787000-49797000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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