Variant report

Variant	rs72936394
Chromosome Location	chr3:99043802-99043803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56959003	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59193328	1.00[AMR][1000 genomes]
rs61235221	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72932602	1.00[AMR][1000 genomes]
rs72934507	1.00[AMR][1000 genomes]
rs72934522	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936315	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936378	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv965360	chr3:99035758-99044695	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99032000-99049200	Weak transcription	Aorta	Aorta
2	chr3:99039600-99044200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:99040000-99044200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:99040200-99049400	Weak transcription	NHDF-Ad	bronchial
5	chr3:99042000-99049000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:99043200-99044600	Enhancers	Fetal Lung	lung
7	chr3:99043200-99044600	Enhancers	Fetal Stomach	stomach
8	chr3:99043400-99044600	Enhancers	Fetal Kidney	kidney
9	chr3:99043600-99044000	Enhancers	Fetal Thymus	thymus
10	chr3:99043600-99044200	Enhancers	HSMMtube	muscle
11	chr3:99043600-99044400	Enhancers	HSMM	muscle
12	chr3:99043600-99044600	Enhancers	Dnd41	blood
13	chr3:99043800-99044400	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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