Variant report

Variant	rs72936396
Chromosome Location	chr3:99048988-99048989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13321172	1.00[AMR][1000 genomes]
rs2682411	1.00[AMR][1000 genomes]
rs28738836	1.00[AMR][1000 genomes]
rs55900103	1.00[AMR][1000 genomes]
rs55928561	1.00[AMR][1000 genomes]
rs58656402	1.00[AMR][1000 genomes]
rs58881272	1.00[AMR][1000 genomes]
rs59148398	1.00[AFR][1000 genomes]
rs60443107	1.00[AMR][1000 genomes]
rs61031480	1.00[AMR][1000 genomes]
rs61481815	1.00[AMR][1000 genomes]
rs73858028	1.00[AMR][1000 genomes]
rs73858092	1.00[AMR][1000 genomes]
rs73859816	1.00[AMR][1000 genomes]
rs73859821	1.00[AMR][1000 genomes]
rs73859822	1.00[AMR][1000 genomes]
rs73859825	1.00[AMR][1000 genomes]
rs73859833	1.00[AMR][1000 genomes]
rs73859870	1.00[AMR][1000 genomes]
rs939446	1.00[AMR][1000 genomes]
rs9817870	1.00[AMR][1000 genomes]
rs9836634	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99032000-99049200	Weak transcription	Aorta	Aorta
2	chr3:99040200-99049400	Weak transcription	NHDF-Ad	bronchial
3	chr3:99042000-99049000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:99044600-99049200	Weak transcription	Fetal Lung	lung
5	chr3:99044800-99051200	Weak transcription	HSMMtube	muscle
6	chr3:99048400-99049000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:99048600-99050000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:99048600-99050000	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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