Variant report

Variant	rs72936632
Chromosome Location	chr11:65939594-65939595
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65938428..65942314-chr11:65944673..65947481,3	MCF-7	breast:
2	chr11:65937498..65939966-chr11:65945396..65947258,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2078069	0.86[ASN][1000 genomes]
rs3814739	0.89[ASN][1000 genomes]
rs4310623	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs479549	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4930173	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4930344	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4930345	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4930346	0.88[ASN][1000 genomes]
rs513474	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs526200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs534489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs555373	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55746937	0.91[ASN][1000 genomes]
rs55838040	0.90[ASN][1000 genomes]
rs55931871	0.86[ASN][1000 genomes]
rs56038054	0.83[ASN][1000 genomes]
rs561373	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56151197	0.86[ASN][1000 genomes]
rs56285664	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57678007	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7123153	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128537	0.90[ASN][1000 genomes]
rs72936635	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72936656	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72936660	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72936672	0.90[ASN][1000 genomes]
rs72936699	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
5	esv1804701	chr11:65922589-65957003	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv1813498	chr11:65922589-65957003	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv362	chr11:65927138-65948793	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3517341	chr11:65932626-65940474	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3517344	chr11:65932976-65940374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1806665	chr11:65933975-65957003	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv1809732	chr11:65934549-65956577	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65905200-65947000	Weak transcription	Fetal Lung	lung
2	chr11:65905400-65939600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:65905800-65952800	Weak transcription	Fetal Stomach	stomach
4	chr11:65906000-65960200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:65910000-65939600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:65910600-65939600	Weak transcription	NHDF-Ad	bronchial
7	chr11:65911000-65943200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:65913400-65951000	Weak transcription	Spleen	Spleen
9	chr11:65914200-65939600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:65918000-65949200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:65919000-65939800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr11:65920400-65954800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:65924800-65943200	Weak transcription	NHEK	skin
14	chr11:65925000-65939800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:65925200-65939600	Weak transcription	HMEC	breast
16	chr11:65925400-65955000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:65925600-65952800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:65925800-65955000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:65927200-65939800	Weak transcription	Lung	lung
20	chr11:65927200-65951000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:65927200-65951000	Weak transcription	Pancreas	Pancrea
22	chr11:65927200-65958400	Weak transcription	Gastric	stomach
23	chr11:65927400-65939600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:65927400-65939800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:65927600-65947600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:65928000-65939600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:65928600-65939800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:65928600-65945000	Weak transcription	GM12878-XiMat	blood
29	chr11:65928800-65957000	Weak transcription	Left Ventricle	heart
30	chr11:65929400-65960200	Weak transcription	HSMM	muscle
31	chr11:65929600-65944400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:65929600-65946400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:65929600-65977800	Weak transcription	HSMMtube	muscle
34	chr11:65929800-65944400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:65930000-65960200	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:65930000-65960800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:65930200-65939800	Weak transcription	Esophagus	oesophagus
38	chr11:65930200-65942600	Weak transcription	Adipose Nuclei	Adipose
39	chr11:65930800-65939800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:65931200-65939600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:65931600-65939600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr11:65932800-65942400	Weak transcription	Placenta	Placenta
43	chr11:65933000-65939800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:65933200-65939600	Weak transcription	Primary B cells from cord blood	blood
45	chr11:65933600-65939600	Weak transcription	Primary T cells from cord blood	blood
46	chr11:65934400-65949200	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr11:65934800-65939600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr11:65936000-65947000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr11:65936400-65956800	Weak transcription	Fetal Intestine Small	intestine
50	chr11:65936800-65939800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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