Variant report

Variant	rs72936945
Chromosome Location	chr18:29677235-29677236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29671668..29674127-chr18:29674569..29677601,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134758	Chromatin interaction
ENSG00000265008	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55655705	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72942709	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909523	chr18:29645496-29679922	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1055457	chr18:29654978-29677371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29673400-29692800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:29673400-29713800	Weak transcription	Spleen	Spleen
3	chr18:29673600-29678400	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr18:29673800-29678000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:29673800-29679400	Weak transcription	Gastric	stomach
6	chr18:29673800-29702000	Weak transcription	Pancreas	Pancrea
7	chr18:29673800-29714000	Weak transcription	Esophagus	oesophagus
8	chr18:29673800-29714200	Weak transcription	Ovary	ovary
9	chr18:29673800-29715200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr18:29673800-29715200	Weak transcription	Lung	lung
11	chr18:29673800-29715800	Weak transcription	Colonic Mucosa	Colon
12	chr18:29673800-29717000	Weak transcription	HSMMtube	muscle
13	chr18:29674000-29677400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr18:29674000-29679000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr18:29674000-29679600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr18:29674000-29689200	Weak transcription	Right Atrium	heart
17	chr18:29674000-29692600	Weak transcription	Placenta	Placenta
18	chr18:29674000-29712000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr18:29674200-29677800	Genic enhancers	Primary monocytes fromperipheralblood	blood
20	chr18:29674200-29692800	Weak transcription	HSMM	muscle
21	chr18:29674200-29693000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr18:29674400-29678400	Genic enhancers	Fetal Thymus	thymus
23	chr18:29674400-29679400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr18:29674600-29677400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr18:29674600-29677400	Enhancers	Liver	Liver
26	chr18:29674600-29677400	Enhancers	HepG2	liver
27	chr18:29674600-29680800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr18:29674600-29695600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr18:29674600-29703000	Weak transcription	Osteobl	bone
30	chr18:29674600-29705600	Weak transcription	NHLF	lung
31	chr18:29674800-29689200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr18:29675000-29680800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr18:29675000-29692200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr18:29675000-29694600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr18:29675000-29717200	Weak transcription	NH-A	brain
36	chr18:29675200-29680000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr18:29675200-29692800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr18:29675400-29677400	Genic enhancers	K562	blood
39	chr18:29675400-29679400	Weak transcription	Psoas Muscle	Psoas
40	chr18:29675400-29681400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr18:29675400-29681600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr18:29675400-29689200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr18:29675400-29693200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr18:29675400-29693200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr18:29675600-29678600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr18:29675600-29691000	Weak transcription	HUVEC	blood vessel
47	chr18:29675600-29691800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr18:29675800-29692000	Weak transcription	HMEC	breast
49	chr18:29676000-29677400	Genic enhancers	Dnd41	blood
50	chr18:29676000-29679600	Enhancers	Primary neutrophils fromperipheralblood	blood

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