Variant report

Variant	rs72939336
Chromosome Location	chr11:36258996-36258997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56958082	1.00[ASN][1000 genomes]
rs72943189	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948124	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36235800-36260400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:36236800-36273200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:36245000-36260800	Weak transcription	Fetal Brain Male	brain
4	chr11:36245200-36261400	Weak transcription	NHEK	skin
5	chr11:36249000-36262800	Weak transcription	Spleen	Spleen
6	chr11:36249600-36259800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:36250800-36270600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:36252200-36260800	Weak transcription	Fetal Intestine Small	intestine
9	chr11:36252200-36270600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:36252200-36277800	Weak transcription	Esophagus	oesophagus
11	chr11:36253600-36262000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:36253800-36270400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:36254000-36259000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:36254400-36259400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:36254400-36262000	Weak transcription	HSMM	muscle
16	chr11:36254400-36262000	Weak transcription	HSMMtube	muscle
17	chr11:36254400-36265400	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:36254800-36260400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:36255000-36264600	Weak transcription	Fetal Stomach	stomach
20	chr11:36255000-36273000	Weak transcription	Brain Germinal Matrix	brain
21	chr11:36257200-36259000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:36257200-36260000	Weak transcription	A549	lung
23	chr11:36257400-36259400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:36257600-36259600	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:36257600-36261800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:36257600-36270400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr11:36257800-36260800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:36257800-36261200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:36257800-36261400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:36257800-36271600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:36258600-36259000	Enhancers	Fetal Lung	lung
32	chr11:36258600-36259200	Enhancers	Fetal Kidney	kidney
33	chr11:36258800-36260400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:36258800-36260800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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