Variant report

Variant	rs72939952
Chromosome Location	chr4:143878879-143878880
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10017963	1.00[AMR][1000 genomes]
rs10021215	1.00[AMR][1000 genomes]
rs10028868	1.00[AMR][1000 genomes]
rs13434730	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28574868	1.00[AMR][1000 genomes]
rs28582179	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28698397	1.00[AMR][1000 genomes]
rs28726132	1.00[AMR][1000 genomes]
rs58440806	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880175	chr4:143779613-143892252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830102	chr4:143820268-143953611	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143874800-143881200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:143875000-143880000	Weak transcription	HSMMtube	muscle
3	chr4:143875200-143882000	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:143878600-143879000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:143878800-143879200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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