Variant report

Variant	rs72939984
Chromosome Location	chr2:40597688-40597689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:40586222..40589135-chr2:40597627..40599804,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11678256	0.85[ASN][1000 genomes]
rs11687700	0.92[ASN][1000 genomes]
rs12472064	0.81[ASN][1000 genomes]
rs34408472	0.92[ASN][1000 genomes]
rs61578092	0.81[ASN][1000 genomes]
rs6544331	0.93[ASN][1000 genomes]
rs6712494	0.89[AFR][1000 genomes]
rs6712622	0.81[AFR][1000 genomes]
rs6724743	0.84[ASN][1000 genomes]
rs72939976	0.93[ASN][1000 genomes]
rs7581611	0.80[AFR][1000 genomes]
rs994249	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2757794	chr2:40547947-40733776	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759044	chr2:40547947-40733776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv873915	chr2:40573350-40615520	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40591000-40598400	Weak transcription	Fetal Stomach	stomach
2	chr2:40591600-40600800	Weak transcription	Psoas Muscle	Psoas
3	chr2:40592200-40598000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:40592200-40598400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:40592200-40598800	Weak transcription	Left Ventricle	heart
6	chr2:40592400-40598000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:40592400-40598000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:40592400-40598400	Weak transcription	Brain Anterior Caudate	brain
9	chr2:40592400-40598400	Weak transcription	Fetal Kidney	kidney
10	chr2:40592400-40598600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:40592400-40598800	Weak transcription	Ovary	ovary
12	chr2:40592400-40605200	Weak transcription	Right Atrium	heart
13	chr2:40592800-40606600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr2:40593400-40607000	Weak transcription	Dnd41	blood
15	chr2:40594200-40605200	Weak transcription	Fetal Brain Female	brain
16	chr2:40595000-40598400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:40595000-40598800	Weak transcription	Fetal Brain Male	brain
18	chr2:40595000-40611000	Weak transcription	Right Ventricle	heart
19	chr2:40595200-40598400	Weak transcription	Hela-S3	cervix
20	chr2:40596000-40601600	Enhancers	Colon Smooth Muscle	Colon
21	chr2:40596400-40598400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr2:40596400-40598800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr2:40596400-40600400	Enhancers	HSMM	muscle
24	chr2:40596400-40601200	Enhancers	Rectal Smooth Muscle	rectum
25	chr2:40596400-40601400	Enhancers	Osteobl	bone
26	chr2:40596600-40598600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr2:40596600-40599800	Enhancers	NH-A	brain
28	chr2:40597000-40598000	Enhancers	Fetal Heart	heart
29	chr2:40597000-40601200	Enhancers	HSMMtube	muscle
30	chr2:40597000-40603400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr2:40597200-40598600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr2:40597200-40599000	Enhancers	NHDF-Ad	bronchial
33	chr2:40597200-40601400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr2:40597400-40598200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr2:40597400-40598400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr2:40597400-40600200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr2:40597400-40600600	Enhancers	Stomach Smooth Muscle	stomach
38	chr2:40597400-40600800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr2:40597600-40598800	Weak transcription	HMEC	breast

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