The 2.0 version of rSNPBase

Variant report

Variant rs72940249
Chromosome Location chr3:111677584-111677585
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:111637200-111690600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr3:111642200-111690400 Weak transcription Spleen Spleen
3 chr3:111645400-111689600 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr3:111652400-111685800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr3:111653000-111686200 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr3:111654400-111695000 Strong transcription Placenta Placenta
7 chr3:111656600-111679200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr3:111657200-111682000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
9 chr3:111658600-111697400 Weak transcription Gastric stomach
10 chr3:111658800-111685800 Weak transcription HepG2 liver
11 chr3:111661600-111689800 Weak transcription Ovary ovary
12 chr3:111663000-111681400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr3:111663800-111681200 Strong transcription NHEK skin
14 chr3:111666600-111697400 Weak transcription Esophagus oesophagus
15 chr3:111670800-111685000 Strong transcription Liver Liver
16 chr3:111671000-111681800 Strong transcription NH-A brain
17 chr3:111671200-111680800 Weak transcription A549 lung
18 chr3:111672800-111677800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr3:111672800-111677800 Strong transcription Left Ventricle heart
20 chr3:111672800-111677800 Weak transcription Right Ventricle heart
21 chr3:111672800-111686000 Weak transcription Fetal Intestine Small intestine
22 chr3:111673000-111677800 Weak transcription Aorta Aorta
23 chr3:111673000-111677800 Weak transcription Rectal Smooth Muscle rectum
24 chr3:111673000-111680000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr3:111673000-111680600 Weak transcription Fetal Intestine Large intestine
26 chr3:111673000-111681800 Weak transcription Muscle Satellite Cultured Cells --
27 chr3:111673000-111682000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr3:111673000-111688400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr3:111673000-111688400 Weak transcription Fetal Stomach stomach
30 chr3:111673000-111697400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr3:111673000-111697400 Weak transcription Pancreas Pancrea
32 chr3:111673400-111677800 Weak transcription Placenta Amnion Placenta Amnion
33 chr3:111673400-111679400 Weak transcription Fetal Heart heart
34 chr3:111673400-111681200 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr3:111673400-111681800 Strong transcription Osteobl bone
36 chr3:111673600-111686000 Weak transcription Fetal Kidney kidney
37 chr3:111673800-111680400 Weak transcription Hela-S3 cervix
38 chr3:111673800-111680800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
39 chr3:111673800-111682000 Weak transcription NHLF lung
40 chr3:111675000-111677800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr3:111675000-111677800 Weak transcription Fetal Muscle Trunk muscle
42 chr3:111675000-111680600 Weak transcription Fetal Muscle Leg muscle
43 chr3:111675000-111682600 Weak transcription Colon Smooth Muscle Colon
44 chr3:111675000-111697400 Weak transcription Lung lung
45 chr3:111675200-111677600 Enhancers Fetal Adrenal Gland Adrenal Gland
46 chr3:111675200-111678000 Enhancers iPS-15b Cell Line embryonic stem cell
47 chr3:111675200-111678000 Enhancers HUVEC blood vessel
48 chr3:111675200-111678200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
49 chr3:111675400-111677800 Weak transcription Stomach Smooth Muscle stomach
50 chr3:111675400-111678000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015