Variant report

Variant	rs72942043
Chromosome Location	chr1:84770998-84770999
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11809752	0.85[AFR][1000 genomes]
rs2055116	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72942047	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830414	chr1:84636738-84824651	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv830426	chr1:84704924-84856229	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84767400-84771600	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr1:84769200-84771400	Weak transcription	Brain Angular Gyrus	brain
3	chr1:84769200-84771400	Weak transcription	Stomach Mucosa	stomach
4	chr1:84769200-84772200	Weak transcription	Right Atrium	heart
5	chr1:84769200-84773600	Weak transcription	Aorta	Aorta
6	chr1:84769200-84791400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:84769400-84772800	Weak transcription	Primary B cells from cord blood	blood
8	chr1:84769600-84773600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:84770000-84776800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:84770200-84771000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:84770200-84771400	Weak transcription	Brain Substantia Nigra	brain
12	chr1:84770400-84776600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:84770600-84772600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:84770800-84771000	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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