Variant report

Variant	rs72942091
Chromosome Location	chr1:84809896-84809897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11809752	0.92[AFR][1000 genomes]
rs72942047	0.92[AFR][1000 genomes]
rs72942059	1.00[AFR][1000 genomes]
rs72942100	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830414	chr1:84636738-84824651	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv830426	chr1:84704924-84856229	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84795800-84827000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr1:84801400-84815000	Weak transcription	Brain Substantia Nigra	brain
3	chr1:84802800-84815600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:84803400-84810000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:84805800-84813800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:84808000-84810000	Weak transcription	Fetal Intestine Small	intestine
7	chr1:84809800-84810200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:84809800-84810200	Enhancers	HMEC	breast
9	chr1:84809800-84810200	Enhancers	HSMM	muscle
10	chr1:84809800-84810200	Enhancers	NH-A	brain
11	chr1:84809800-84810200	Enhancers	NHEK	skin
12	chr1:84809800-84810400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:84809800-84810400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:84809800-84810400	Enhancers	K562	blood
15	chr1:84809800-84810600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr1:84809800-84810600	Enhancers	Osteobl	bone
17	chr1:84809800-84811200	Enhancers	NHDF-Ad	bronchial
18	chr1:84809800-84811400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:84809800-84811400	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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